CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012844_P002	Maize	plasma membrane	95.26	95.26
EES07793	Sorghum	cytosol	95.26	95.26
Os03t0851300-01	Rice	cytosol	93.0	93.0
TraesCS4A01G329600.1	Wheat	cytosol	88.94	88.94
Zm00001d009068_P002	Maize	extracellular	40.63	88.67
TraesCS5B01G544500.1	Wheat	cytosol	88.49	88.49
TraesCS5D01G543600.1	Wheat	golgi, unclear	88.26	88.46
GSMUA_Achr2P16950_001	Banana	cytosol	82.39	86.49
GSMUA_Achr4P23680_001	Banana	cytosol	80.14	84.12
HORVU5Hr1G122560.2	Barley	cytosol, nucleus	87.36	83.77
KRH59502	Soybean	cytosol	83.07	83.45
CDY56539	Canola	cytosol, nucleus	69.98	81.15
HORVU5Hr1G122430.1	Barley	plastid	88.04	80.58
KRH64121	Soybean	cytosol	80.36	80.36
CDX81147	Canola	cytosol	76.3	80.09
Solyc04g051370.2.1	Tomato	nucleus	79.91	80.09
CDY40066	Canola	cytosol	75.85	79.62
Solyc04g012040.2.1	Tomato	cytosol	79.23	79.41
Bra006038.1-P	Field mustard	cytosol	75.62	79.38
CDX69878	Canola	cytosol	75.62	79.38
PGSC0003DMT400060796	Potato	cytosol	79.01	79.19
Bra009074.1-P	Field mustard	cytosol	75.39	79.15
CDY21613	Canola	cytosol	75.39	79.15
KRH53822	Soybean	cytosol	79.46	79.1
CDX85790	Canola	cytosol	78.56	77.68
Bra028611.1-P	Field mustard	cytosol	78.56	77.68
KRH43368	Soybean	vacuole	82.62	76.25
HORVU1Hr1G003160.1	Barley	cytosol, nucleus, plastid	33.41	75.51
AT5G64760.1	Thale cress	cytosol	75.17	75.34
Bra026640.1-P	Field mustard	cytosol	52.82	75.0
PGSC0003DMT400050736	Potato	cytosol	79.23	74.52
KRH43942	Soybean	cytosol, mitochondrion, nucleus	23.93	69.74
AT5G09900.3	Thale cress	nucleus	61.63	59.09
CDY14507	Canola	cytosol	9.03	55.56
OQU77597	Sorghum	plastid	10.61	46.53
OQU81472	Sorghum	extracellular	6.77	41.67

Protein Annotations

Gene3D:1.10.10.10	MapMan:19.2.6.2.2.4	EntrezGene:8061407	UniProt:C5WSV1	ncoils:Coil	EnsemblPlants:EER90506
ProteinID:EER90506	ProteinID:EER90506.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0008541	GO:GO:0009056	GO:GO:0009987
GO:GO:0019538	GO:GO:0031595	GO:GO:0043161	InterPro:IPR000717	InterPro:IPR036388	InterPro:PCI_dom
PFAM:PF01399	PFscan:PS50250	InterPro:PSMD12	PANTHER:PTHR10855	PANTHER:PTHR10855:SF1	SMART:SM00088
SMART:SM00753	EnsemblPlantsGene:SORBI_3001G010700	SUPFAM:SSF46785	unigene:Sbi.14588	UniParc:UPI0001A824D9	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	RefSeq:XP_002463508.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:940000..945188

Molecular Weight (calculated)

50622.9 Da

IEP (calculated)

7.751

GRAVY (calculated)

-0.208

Length

443 amino acids

Sequence
(BLAST)

001: MEGDSTNLDA AIESLLNVEK QMRLAGDVAG TRKAVIDIVE LCYKAGAWKT LNDQIVLLSK RRGQLKQAIT AMVQKAMDYI DLTPDTDTRI ELIKTLSSVS
101: AGKIYVEIER ARLIRRLAKI KEEQGQIDEA ADLMQEVAVE TFGSMAKTEK IAFILEQVRL CLDRQDYVRA QILSRKISTR VFEADPSKEK KKPKEGDNIV
201: QDAPADIPSL LELKRVYYEL MIRYYMHNND YLEICRCYKA IYDIPAIKED PTKWIPILRK ICWYLVLAPH DPMQSSLLNA TLEDKNLSEI PNFRLLLKQL
301: VTMEVIQWTT LWEFAKHEYE NEKNLLGGAL GAKAAEDLKL RIIEHNILVV SKYYSRITLK RLADLLCLSL QEAEKHLSDM VNSKALIAKI DRPMGVVSFQ
401: TTKDCNGVLN SWATNLEKLL DLVEKSCHQI HKETMIHKAV LKA

Best Arabidopsis Sequence Match ( AT5G09900.1 )
(BLAST)

001: MGDSGKLEAT IDRLLNEEKQ MRLAENVAGT RKAATEILQL CFDAKDWKLL NEQILNLSKK RGQLKQAVQS MVQQAMQYID QTPDIETRIE LIKTLNNVSA
101: GKIYVEIERA RLTKKLAKIK EEQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDFVRAQ ILSRKINPRV FDADTKKDKK KPKEGDNMVE
201: EAPADIPTLL ELKRIYYELM IRYYSHNNEY IEICRSYKAI YDIPSVKETP EQWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV
301: TMEVIQWTSL WNKYKDEFEK EKSMIGGSLG DKAGEDLKLR IIEHNILVVS KYYARITLKR LAELLCLSME EAEKHLSEMV VSKALIAKID RPSGIVCFQI
401: AKDSNEILNS WAGNLEKLLD LVEKSCHQIH KETMVHKAAL RP

Arabidopsis Description

EMB210726S proteasome regulatory subunit, putative (RPN5) [Source:UniProtKB/TrEMBL;Acc:B3H6B0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.