Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P23680_001 | Banana | cytosol | 90.76 | 90.76 |
| KRH59502 | Soybean | cytosol | 87.2 | 83.45 |
| Os03t0851300-01 | Rice | cytosol | 87.44 | 83.3 |
| VIT_07s0031g01970.t01 | Wine grape | cytosol | 88.15 | 83.22 |
| CDY56539 | Canola | cytosol, nucleus | 75.12 | 82.98 |
| EER90506 | Sorghum | cytosol | 86.49 | 82.39 |
| CDY40066 | Canola | cytosol | 82.23 | 82.23 |
| CDY21613 | Canola | cytosol | 82.23 | 82.23 |
| CDX69878 | Canola | cytosol | 82.23 | 82.23 |
| CDX81147 | Canola | cytosol | 81.99 | 81.99 |
| Bra009074.1-P | Field mustard | cytosol | 81.99 | 81.99 |
| Bra006038.1-P | Field mustard | cytosol | 81.28 | 81.28 |
| KRH64121 | Soybean | cytosol | 85.31 | 81.26 |
| Zm00001d012844_P002 | Maize | plasma membrane | 85.31 | 81.26 |
| EES07793 | Sorghum | cytosol | 85.07 | 81.04 |
| TraesCS5D01G543600.1 | Wheat | golgi, unclear | 84.83 | 81.0 |
| TraesCS4A01G329600.1 | Wheat | cytosol | 84.83 | 80.81 |
| TraesCS5B01G544500.1 | Wheat | cytosol | 84.6 | 80.59 |
| KRH53822 | Soybean | cytosol | 84.6 | 80.22 |
| Solyc04g051370.2.1 | Tomato | nucleus | 83.41 | 79.64 |
| Zm00001d009068_P002 | Maize | extracellular | 38.15 | 79.31 |
| PGSC0003DMT400060796 | Potato | cytosol | 82.94 | 79.19 |
| Solyc04g012040.2.1 | Tomato | cytosol | 82.94 | 79.19 |
| Zm00001d018523_P003 | Maize | extracellular | 82.7 | 78.78 |
| CDX85790 | Canola | cytosol | 81.99 | 77.23 |
| Bra028611.1-P | Field mustard | cytosol | 81.99 | 77.23 |
| KRH43368 | Soybean | vacuole | 86.97 | 76.46 |
| HORVU5Hr1G122560.2 | Barley | cytosol, nucleus | 83.65 | 76.41 |
| AT5G64760.1 | Thale cress | cytosol | 79.38 | 75.79 |
| PGSC0003DMT400050736 | Potato | cytosol | 83.18 | 74.52 |
| Bra026640.1-P | Field mustard | cytosol | 54.5 | 73.72 |
| HORVU5Hr1G122430.1 | Barley | plastid | 84.36 | 73.55 |
| HORVU1Hr1G003160.1 | Barley | cytosol, nucleus, plastid | 32.23 | 69.39 |
| KRH43942 | Soybean | cytosol, mitochondrion, nucleus | 24.88 | 69.08 |
| AT5G09900.3 | Thale cress | nucleus | 63.74 | 58.23 |
| CDY14507 | Canola | cytosol | 9.72 | 56.94 |
| VIT_12s0035g00780.t01 | Wine grape | cytosol | 11.85 | 54.35 |
| VIT_08s0058g00020.t01 | Wine grape | cytosol | 9.0 | 46.34 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P16950_001 | EnsemblPlants:GSMUA_Achr2T16950_001 | EnsemblPlantsGene:GSMUA_Achr2G16950_001 | Gene3D:1.10.10.10 | InterPro:IPR000717 | InterPro:IPR036388 |
| InterPro:PCI_dom | InterPro:PSMD12 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | PANTHER:PTHR10855 | PANTHER:PTHR10855:SF1 |
| PFAM:PF01399 | PFscan:PS50250 | SEG:seg | SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 |
| UniParc:UPI00029608FD | UniProt:M0S8N6 | MapMan:19.2.6.2.2.4 | : | : | : |
Description
Putative 26S proteasome non-ATPase regulatory subunit 12 [Source:GMGC_GENE;Acc:GSMUA_Achr2G16950_001]
Coordinates
chr2:-:17650886..17658749
Molecular Weight (calculated)
48487.5 Da
IEP (calculated)
8.596
GRAVY (calculated)
-0.186
Length
422 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLAGDVAGT KKAVLDIVEL CYKARAWKTL NDQIVLLSKR RGQLKQAVTA MVQKAMLYID DTPDLETRIE LIKTLNSVSA GKIYVEIERA RLIKKLAKIK
101: EDQGLIAEAA DLMQEIAVET FGAMAKTEKI AFILEQVRLC LDRQDYVRAQ ILSRKISPRV FDADASKEKK KPKEGDNIVQ EAPADIPSLL ELKRIYYELM
201: IRYHSHNNDY LEICRSYKSI YDIPSVKEDP AQWIPVLRKI CWYLVLAPHD PMQSSLLNST LEDKNLFELA NFRFMLKQLV TMEVIHWATL WETYKDEFEN
301: EKNLLGGSLG PKAAEDLKLR IIEHNILVVS KYYSRITLKR LSELLCLSLQ EAEKHLSDMV VSKALVAKID RPMGIVCFQR AKDSNDILNS WAMNLEKLLD
401: LVEKSCHQIH KETMIHKAVL KA
101: EDQGLIAEAA DLMQEIAVET FGAMAKTEKI AFILEQVRLC LDRQDYVRAQ ILSRKISPRV FDADASKEKK KPKEGDNIVQ EAPADIPSLL ELKRIYYELM
201: IRYHSHNNDY LEICRSYKSI YDIPSVKEDP AQWIPVLRKI CWYLVLAPHD PMQSSLLNST LEDKNLFELA NFRFMLKQLV TMEVIHWATL WETYKDEFEN
301: EKNLLGGSLG PKAAEDLKLR IIEHNILVVS KYYSRITLKR LSELLCLSLQ EAEKHLSDMV VSKALVAKID RPMGIVCFQR AKDSNDILNS WAMNLEKLLD
401: LVEKSCHQIH KETMIHKAVL KA
001: MANSGKLEAT IDRLLNEEKQ MRLAENVAGT RKAATEILQL CFDAKDWKLL NEQILNLSKK RGQLKQAVQS MVQQAMQYID QTPDIETRIE LIKTLNNVSA
101: GKIYVEIERA RLTKKLAKIK EEQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDFVRAQ ILSRKINPRV FDADTKKDKK KPKEGDNMVE
201: EAPADIPTLL ELKRIYYELM IRYYSHNNEY IEICRSYKAI YDIPSVKETP EQWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV
301: TMEVIQWTSL WNKYKDEFEK EKSMIGGSLG DKAGEDLKLR IIEHNILVVS KYYARITLKR LAELLCLSME EAEKHLSEMV VSKALIAKID RPSGIVCFQI
401: AKDSNEILNS WAGNLEKLLD LVEKSCHQIH KETMVHKAAL RP
101: GKIYVEIERA RLTKKLAKIK EEQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDFVRAQ ILSRKINPRV FDADTKKDKK KPKEGDNMVE
201: EAPADIPTLL ELKRIYYELM IRYYSHNNEY IEICRSYKAI YDIPSVKETP EQWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV
301: TMEVIQWTSL WNKYKDEFEK EKSMIGGSLG DKAGEDLKLR IIEHNILVVS KYYARITLKR LAELLCLSME EAEKHLSEMV VSKALIAKID RPSGIVCFQI
401: AKDSNEILNS WAGNLEKLLD LVEKSCHQIH KETMVHKAAL RP
Arabidopsis Description
EMB210726S proteasome regulatory subunit, putative (RPN5) [Source:UniProtKB/TrEMBL;Acc:B3H6B0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.