Factsheet for VIT_07s0031g01970.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59502	Soybean	cytosol	87.47	88.66
GSMUA_Achr2P16950_001	Banana	cytosol	83.22	88.15
GSMUA_Achr4P23680_001	Banana	cytosol	82.77	87.68
KRH64121	Soybean	cytosol	85.46	86.23
Solyc04g051370.2.1	Tomato	nucleus	85.01	85.97
PGSC0003DMT400060796	Potato	cytosol	84.79	85.75
Solyc04g012040.2.1	Tomato	cytosol	84.56	85.52
KRH53822	Soybean	cytosol	84.56	84.94
Os03t0851300-01	Rice	cytosol	83.45	84.2
CDY56539	Canola	cytosol, nucleus	71.81	84.03
CDY40066	Canola	cytosol	78.97	83.65
CDX81147	Canola	cytosol	78.52	83.18
Bra006038.1-P	Field mustard	cytosol	78.3	82.94
CDY21613	Canola	cytosol	77.85	82.46
CDX69878	Canola	cytosol	77.63	82.23
Bra009074.1-P	Field mustard	cytosol	77.4	81.99
Zm00001d018523_P003	Maize	extracellular	80.76	81.49
CDX85790	Canola	cytosol	81.66	81.47
Bra028611.1-P	Field mustard	cytosol	81.66	81.47
KRH43368	Soybean	vacuole	87.47	81.46
Zm00001d012844_P002	Maize	plasma membrane	80.54	81.26
TraesCS5D01G543600.1	Wheat	golgi, unclear	80.09	81.0
PGSC0003DMT400050736	Potato	cytosol	85.23	80.89
TraesCS4A01G329600.1	Wheat	cytosol	79.87	80.59
VIT_12s0035g00780.t01	Wine grape	cytosol	16.55	80.43
TraesCS5B01G544500.1	Wheat	cytosol	79.64	80.36
AT5G64760.1	Thale cress	cytosol	78.52	79.41
Zm00001d009068_P002	Maize	extracellular	35.79	78.82
HORVU5Hr1G122560.2	Barley	cytosol, nucleus	78.97	76.41
Bra026640.1-P	Field mustard	cytosol	53.24	76.28
VIT_08s0058g00020.t01	Wine grape	cytosol	13.65	74.39
KRH43942	Soybean	cytosol, mitochondrion, nucleus	25.06	73.68
HORVU5Hr1G122430.1	Barley	plastid	79.64	73.55
HORVU1Hr1G003160.1	Barley	cytosol, nucleus, plastid	29.75	67.86
AT5G09900.3	Thale cress	nucleus	63.98	61.9
CDY14507	Canola	cytosol	9.17	56.94

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100256032	wikigene:100256032	MapMan:19.2.6.2.2.4	ProteinID:CCB47135	ProteinID:CCB47135.1
ncoils:Coil	UniProt:F6H4C4	EMBL:FN595233	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0008541	GO:GO:0009056
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0019538	GO:GO:0031595	GO:GO:0043161
InterPro:IPR000717	InterPro:IPR036388	EntrezGene:LOC100256032	wikigene:LOC100256032	InterPro:PCI_dom	PFAM:PF01399
PFscan:PS50250	InterPro:PSMD12	PANTHER:PTHR10855	PANTHER:PTHR10855:SF1	SMART:SM00088	SMART:SM00753
SUPFAM:SSF46785	TIGR:TC55806	UniParc:UPI0002109806	ArrayExpress:VIT_07s0031g01970	EnsemblPlantsGene:VIT_07s0031g01970	EnsemblPlants:VIT_07s0031g01970.t01
unigene:Vvi.1116	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_002278249	RefSeq:XP_002278249.1	SEG:seg

Description

No Description!

Coordinates

chr7:+:18094225..18101467

Molecular Weight (calculated)

51229.5 Da

IEP (calculated)

7.238

GRAVY (calculated)

-0.247

Length

447 amino acids

Sequence
(BLAST)

001: MNFGITEAQR NLDAEIEALL NVEKQIRLAG DVSGTKKAVT DILQLCFEAR AWKTLNDQIV LLSKRRGQLK QAVTAMVQQA MQYIDQTPDI ESKIELIKTL
101: NSVSAGKIYV EIERARLIKK LAKIKEEQGH IAEAADLMQE IAVETFGAMA KTEKIAFILE QVRLCLDRQD YVRAQILSRK ISPRVFDADS SKEKKKPKEG
201: DSVVEEAPAD IPSLPELKRI YYELMIRYHS HSNDYLEICR SYKAIYEIPS VREDPAQWIP VLRKICWYLV LSPHDPMQSS LLNSTLEDKN LSEIPNFRLL
301: LKQLVTMEVI QWISLWNMFK DEFENEKNML GGSLGDKAAE DLRQRIIEHN ILVVSKYYSR ITLKRLAELL CLSVQEAEKH LSDMVVSKSL VAKIDRPMGV
401: VCFQTAKDSN DILNSWSMNL EKLLDLVEKS CHQIHKETMV HKAALKV

Best Arabidopsis Sequence Match ( AT5G09900.2 )
(BLAST)

001: MANSGKLEAT IDRLLNEEKQ MRLAENVAGT RKAATEILQL CFDAKDWKLL NEQILNLSKK RGQLKQAVQS MVQQAMQYID QTPDIETRIE LIKTLNNVSA
101: GKIYVEIERA RLTKKLAKIK EEQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDFVRAQ ILSRKINPRV FDADTKKDKK KPKEGDNMVE
201: EAPADIPTLL ELKRIYYELM IRYYSHNNEY IEICRSYKAI YDIPSVKETP EQWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV
301: TMEVIQWTSL WNKYKDEFEK EKSMIGGSLG DKAGEDLKLR IIEHNILVVS KYYARITLKR LAELLCLSME EAEKHLSEMV VSKALIAKID RPSGIVCFQI
401: AKDSNEILNS WAGNLEKLLD LVEKSCHQIH KETMVHKAAL RP

Arabidopsis Description

EMB210726S proteasome regulatory subunit, putative (RPN5) [Source:UniProtKB/TrEMBL;Acc:B3H6B0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.