Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g012040.2.1 | Tomato | cytosol | 97.51 | 97.51 |
| VIT_07s0031g01970.t01 | Wine grape | cytosol | 85.75 | 84.79 |
| PGSC0003DMT400050736 | Potato | cytosol | 90.05 | 84.5 |
| KRH59502 | Soybean | cytosol | 84.16 | 84.35 |
| CDY40066 | Canola | cytosol | 79.41 | 83.18 |
| GSMUA_Achr4P23680_001 | Banana | cytosol | 79.19 | 82.94 |
| GSMUA_Achr2P16950_001 | Banana | cytosol | 79.19 | 82.94 |
| CDY56539 | Canola | cytosol, nucleus | 71.49 | 82.72 |
| CDX81147 | Canola | cytosol | 78.96 | 82.7 |
| CDY21613 | Canola | cytosol | 78.73 | 82.46 |
| KRH64121 | Soybean | cytosol | 82.58 | 82.39 |
| Bra006038.1-P | Field mustard | cytosol | 78.51 | 82.23 |
| CDX69878 | Canola | cytosol | 78.05 | 81.75 |
| Bra009074.1-P | Field mustard | cytosol | 77.83 | 81.52 |
| Os03t0851300-01 | Rice | cytosol | 81.0 | 80.81 |
| AT5G64760.1 | Thale cress | cytosol | 80.77 | 80.77 |
| CDX85790 | Canola | cytosol | 81.67 | 80.58 |
| Bra028611.1-P | Field mustard | cytosol | 81.67 | 80.58 |
| KRH53822 | Soybean | cytosol | 81.0 | 80.45 |
| TraesCS5D01G543600.1 | Wheat | golgi, unclear | 79.19 | 79.19 |
| EER90506 | Sorghum | cytosol | 79.19 | 79.01 |
| TraesCS4A01G329600.1 | Wheat | cytosol | 78.73 | 78.56 |
| TraesCS5B01G544500.1 | Wheat | cytosol | 78.28 | 78.1 |
| Zm00001d012844_P002 | Maize | plasma membrane | 77.83 | 77.65 |
| EES07793 | Sorghum | cytosol | 77.6 | 77.43 |
| KRH43368 | Soybean | vacuole | 83.94 | 77.29 |
| Zm00001d018523_P003 | Maize | extracellular | 76.7 | 76.52 |
| Bra026640.1-P | Field mustard | cytosol | 52.94 | 75.0 |
| Zm00001d009068_P002 | Maize | extracellular | 33.48 | 72.91 |
| VIT_12s0035g00780.t01 | Wine grape | cytosol | 14.48 | 69.57 |
| KRH43942 | Soybean | cytosol, mitochondrion, nucleus | 23.76 | 69.08 |
| AT5G09900.3 | Thale cress | nucleus | 63.8 | 61.04 |
| VIT_08s0058g00020.t01 | Wine grape | cytosol | 11.09 | 59.76 |
| CDY14507 | Canola | cytosol | 9.05 | 55.56 |
| HORVU5Hr1G035770.1 | Barley | cytosol | 5.88 | 46.43 |
| OQU77597 | Sorghum | plastid | 9.73 | 42.57 |
| OQU81472 | Sorghum | extracellular | 5.66 | 34.72 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400060796 | EnsemblPlantsGene:PGSC0003DMG401023644 | EntrezGene:102584724 | Gene3D:1.10.10.10 | InterPro:IPR000717 | InterPro:IPR036388 |
| InterPro:PCI_dom | InterPro:PSMD12 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | PANTHER:PTHR10855 | PANTHER:PTHR10855:SF1 |
| PFAM:PF01399 | PFscan:PS50250 | PGSC:PGSC0003DMG401023644 | RefSeq:XP_006346729.1 | SEG:seg | SMART:SM00088 |
| SMART:SM00753 | SUPFAM:SSF46785 | UniParc:UPI000294CF64 | UniProt:M1C6F6 | MapMan:19.2.6.2.2.4 | : |
Description
26S proteasome subunit RPN5b [Source:PGSC_GENE;Acc:PGSC0003DMG401023644]
Coordinates
chr4:+:7897892..7906331
Molecular Weight (calculated)
50838.1 Da
IEP (calculated)
7.468
GRAVY (calculated)
-0.235
Length
442 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGDRNLEAK IEILLNVEKQ MRQAGDVAGT RKSAIDILQL CFEARAWTTL NEQIVLLSKR RGQLKQAVQA MVQQAMQYID QTPDLETKIE LIKTLNNVAA
101: GKIYVEIERA RLIKKLAKIK EEQGLIAEAA NLMQEVAVET FGAMAKTEKI AFILEQVRLC LDSLDYVRAQ ILSRKINPKV FEADPSKERK KPKEGDNVVE
201: EPAPDIPSLL ELKRIYYELM IRYYFQNNDY LDICRCYKAI YEIPSVKENP AQWIPVLRKI CWYLVLSPHD PMQSSLHYST LEDKNLSEIP HFRLLLKQLI
301: TMEVIQWTSL WNTFKDEFEN EKNMLGGSLG DKAAEDLRLR VIEHNILVVS KYYSRITLKR LADLLCLSIQ EAEKHLSEMV VSKALVAKID RPVGIVCFQP
401: AKDSNDILNS WASNLEKLLD LVEKSCHQIH KETMVHKAAI RA
101: GKIYVEIERA RLIKKLAKIK EEQGLIAEAA NLMQEVAVET FGAMAKTEKI AFILEQVRLC LDSLDYVRAQ ILSRKINPKV FEADPSKERK KPKEGDNVVE
201: EPAPDIPSLL ELKRIYYELM IRYYFQNNDY LDICRCYKAI YEIPSVKENP AQWIPVLRKI CWYLVLSPHD PMQSSLHYST LEDKNLSEIP HFRLLLKQLI
301: TMEVIQWTSL WNTFKDEFEN EKNMLGGSLG DKAAEDLRLR VIEHNILVVS KYYSRITLKR LADLLCLSIQ EAEKHLSEMV VSKALVAKID RPVGIVCFQP
401: AKDSNDILNS WASNLEKLLD LVEKSCHQIH KETMVHKAAI RA
001: MANSGKLEAT IDRLLNEEKQ MRLAENVAGT RKAATEILQL CFDAKDWKLL NEQILNLSKK RGQLKQAVQS MVQQAMQYID QTPDIETRIE LIKTLNNVSA
101: GKIYVEIERA RLTKKLAKIK EEQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDFVRAQ ILSRKINPRV FDADTKKDKK KPKEGDNMVE
201: EAPADIPTLL ELKRIYYELM IRYYSHNNEY IEICRSYKAI YDIPSVKETP EQWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV
301: TMEVIQWTSL WNKYKDEFEK EKSMIGGSLG DKAGEDLKLR IIEHNILVVS KYYARITLKR LAELLCLSME EAEKHLSEMV VSKALIAKID RPSGIVCFQI
401: AKDSNEILNS WAGNLEKLLD LVEKSCHQIH KETMVHKAAL RP
101: GKIYVEIERA RLTKKLAKIK EEQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDFVRAQ ILSRKINPRV FDADTKKDKK KPKEGDNMVE
201: EAPADIPTLL ELKRIYYELM IRYYSHNNEY IEICRSYKAI YDIPSVKETP EQWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV
301: TMEVIQWTSL WNKYKDEFEK EKSMIGGSLG DKAGEDLKLR IIEHNILVVS KYYARITLKR LAELLCLSME EAEKHLSEMV VSKALIAKID RPSGIVCFQI
401: AKDSNEILNS WAGNLEKLLD LVEKSCHQIH KETMVHKAAL RP
Arabidopsis Description
EMB210726S proteasome regulatory subunit, putative (RPN5) [Source:UniProtKB/TrEMBL;Acc:B3H6B0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.