Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY40066 | Canola | cytosol | 97.87 | 97.87 |
| CDY21613 | Canola | cytosol | 97.63 | 97.63 |
| CDX69878 | Canola | cytosol | 97.39 | 97.39 |
| CDY56539 | Canola | cytosol, nucleus | 87.68 | 96.86 |
| CDX85790 | Canola | cytosol | 97.63 | 91.96 |
| GSMUA_Achr2P16950_001 | Banana | cytosol | 81.99 | 81.99 |
| GSMUA_Achr4P23680_001 | Banana | cytosol | 81.04 | 81.04 |
| KRH59502 | Soybean | cytosol | 84.36 | 80.73 |
| Solyc04g012040.2.1 | Tomato | cytosol | 82.94 | 79.19 |
| Solyc04g051370.2.1 | Tomato | nucleus | 82.7 | 78.96 |
| PGSC0003DMT400060796 | Potato | cytosol | 82.7 | 78.96 |
| VIT_07s0031g01970.t01 | Wine grape | cytosol | 83.18 | 78.52 |
| Os03t0851300-01 | Rice | cytosol | 81.28 | 77.43 |
| Zm00001d009068_P002 | Maize | extracellular | 36.97 | 76.85 |
| KRH64121 | Soybean | cytosol | 80.33 | 76.52 |
| TraesCS5D01G543600.1 | Wheat | golgi, unclear | 80.09 | 76.47 |
| EER90506 | Sorghum | cytosol | 80.09 | 76.3 |
| TraesCS4A01G329600.1 | Wheat | cytosol | 80.09 | 76.3 |
| TraesCS5B01G544500.1 | Wheat | cytosol | 79.86 | 76.07 |
| KRH53822 | Soybean | cytosol | 80.09 | 75.96 |
| EES07793 | Sorghum | cytosol | 79.62 | 75.85 |
| Zm00001d012844_P002 | Maize | plasma membrane | 78.91 | 75.17 |
| PGSC0003DMT400050736 | Potato | cytosol | 82.94 | 74.31 |
| Zm00001d018523_P003 | Maize | extracellular | 77.25 | 73.59 |
| KRH43368 | Soybean | vacuole | 83.65 | 73.54 |
| AT5G09900.3 | Thale cress | nucleus | 76.54 | 69.91 |
| KRH43942 | Soybean | cytosol, mitochondrion, nucleus | 24.64 | 68.42 |
| CDY14507 | Canola | cytosol | 10.9 | 63.89 |
| VIT_12s0035g00780.t01 | Wine grape | cytosol | 10.66 | 48.91 |
| HORVU5Hr1G035770.1 | Barley | cytosol | 5.45 | 41.07 |
| VIT_08s0058g00020.t01 | Wine grape | cytosol | 7.58 | 39.02 |
| OQU77597 | Sorghum | plastid | 9.24 | 38.61 |
| OQU81472 | Sorghum | extracellular | 5.21 | 30.56 |
Protein Annotations
| EnsemblPlants:CDX81147 | EnsemblPlantsGene:GSBRNA2T00134599001 | Gene3D:1.10.10.10 | InterPro:IPR000717 | InterPro:IPR036388 | InterPro:PCI_dom |
| InterPro:PSMD12 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | PANTHER:PTHR10855 | PANTHER:PTHR10855:SF1 | PFAM:PF01399 |
| PFscan:PS50250 | ProteinID:CDX81147 | ProteinID:CDX81147.1 | SEG:seg | SMART:SM00088 | SMART:SM00753 |
| SUPFAM:SSF46785 | UniParc:UPI0004EDC999 | MapMan:19.2.6.2.2.4 | : | : | : |
Description
BnaC03g04010D
Coordinates
chrLK031823:-:1937124..1939957
Molecular Weight (calculated)
48632.5 Da
IEP (calculated)
8.248
GRAVY (calculated)
-0.285
Length
422 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLAENVAGT RKAATEILQL CFEAKDWKLL NEQILNLSKK RGQLKQAVQS MVQQAMQYID QTPDIETKIE LIKTLNNVSA GKIYVEIERA RLTRKLAKIK
101: EEQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDYVRAQ ILSRKINPRV FDADTKKDKK KPKEGENIVE EAPADIPTLL ELKRIYYELM
201: IRYYSHNNEY LEICRSYKAI YDIPSVKETP EKWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV TMEVIQWTAL WNKYKDEFEK
301: EKSLVGGSLG DKAGEDLKLR IIEHNILVVS KYYSRITLKR LAELLCLSIE EAEKHLSEMV VSKALIAKID RPSGIVCFQV AKDSNEILNS WAVNLEKLLD
401: LVEKSCHQIH KETMVHKAVL RS
101: EEQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDYVRAQ ILSRKINPRV FDADTKKDKK KPKEGENIVE EAPADIPTLL ELKRIYYELM
201: IRYYSHNNEY LEICRSYKAI YDIPSVKETP EKWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV TMEVIQWTAL WNKYKDEFEK
301: EKSLVGGSLG DKAGEDLKLR IIEHNILVVS KYYSRITLKR LAELLCLSIE EAEKHLSEMV VSKALIAKID RPSGIVCFQV AKDSNEILNS WAVNLEKLLD
401: LVEKSCHQIH KETMVHKAVL RS
001: MANSGKLEAT IDRLLNEEKQ MRLAENVAGT RKAATEILQL CFDAKDWKLL NEQILNLSKK RGQLKQAVQS MVQQAMQYID QTPDIETRIE LIKTLNNVSA
101: GKIYVEIERA RLTKKLAKIK EEQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDFVRAQ ILSRKINPRV FDADTKKDKK KPKEGDNMVE
201: EAPADIPTLL ELKRIYYELM IRYYSHNNEY IEICRSYKAI YDIPSVKETP EQWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV
301: TMEVIQWTSL WNKYKDEFEK EKSMIGGSLG DKAGEDLKLR IIEHNILVVS KYYARITLKR LAELLCLSME EAEKHLSEMV VSKALIAKID RPSGIVCFQI
401: AKDSNEILNS WAGNLEKLLD LVEKSCHQIH KETMVHKAAL RP
101: GKIYVEIERA RLTKKLAKIK EEQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDFVRAQ ILSRKINPRV FDADTKKDKK KPKEGDNMVE
201: EAPADIPTLL ELKRIYYELM IRYYSHNNEY IEICRSYKAI YDIPSVKETP EQWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV
301: TMEVIQWTSL WNKYKDEFEK EKSMIGGSLG DKAGEDLKLR IIEHNILVVS KYYARITLKR LAELLCLSME EAEKHLSEMV VSKALIAKID RPSGIVCFQI
401: AKDSNEILNS WAGNLEKLLD LVEKSCHQIH KETMVHKAAL RP
Arabidopsis Description
EMB210726S proteasome regulatory subunit, putative (RPN5) [Source:UniProtKB/TrEMBL;Acc:B3H6B0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.