Factsheet for VIT_12s0035g00780.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0058g00020.t01	Wine grape	cytosol	72.83	81.71
Bra026640.1-P	Field mustard	cytosol	57.61	16.99
VIT_07s0031g01970.t01	Wine grape	cytosol	80.43	16.55
PGSC0003DMT400060796	Potato	cytosol	69.57	14.48
KRH59502	Soybean	cytosol	68.48	14.29
Solyc04g012040.2.1	Tomato	cytosol	68.48	14.25
Solyc04g051370.2.1	Tomato	nucleus	67.39	14.03
KRH64121	Soybean	cytosol	66.3	13.77
KRH53822	Soybean	cytosol	64.13	13.26
PGSC0003DMT400050736	Potato	cytosol	67.39	13.16
KRH43368	Soybean	vacuole	68.48	13.12
Zm00001d018523_P003	Maize	extracellular	61.96	12.87
Zm00001d012844_P002	Maize	plasma membrane	61.96	12.87
Os03t0851300-01	Rice	cytosol	59.78	12.42
TraesCS5D01G543600.1	Wheat	golgi, unclear	58.7	12.22
GSMUA_Achr4P23680_001	Banana	cytosol	54.35	11.85
GSMUA_Achr2P16950_001	Banana	cytosol	54.35	11.85
CDX85790	Canola	cytosol	57.61	11.83
Bra028611.1-P	Field mustard	cytosol	57.61	11.83
TraesCS5B01G544500.1	Wheat	cytosol	56.52	11.74
TraesCS4A01G329600.1	Wheat	cytosol	56.52	11.74
AT5G64760.1	Thale cress	cytosol	54.35	11.31
AT5G09900.3	Thale cress	nucleus	55.43	11.04
HORVU5Hr1G122560.2	Barley	cytosol, nucleus	55.43	11.04
HORVU5Hr1G122430.1	Barley	plastid	57.61	10.95
CDX81147	Canola	cytosol	48.91	10.66
Bra006038.1-P	Field mustard	cytosol	48.91	10.66
CDX69878	Canola	cytosol	47.83	10.43
CDY21613	Canola	cytosol	47.83	10.43
CDY40066	Canola	cytosol	47.83	10.43
Bra009074.1-P	Field mustard	cytosol	46.74	10.19
CDY56539	Canola	cytosol, nucleus	22.83	5.5
CDY14507	Canola	cytosol	3.26	4.17
KRH43942	Soybean	cytosol, mitochondrion, nucleus	0.0	0.0
HORVU1Hr1G003160.1	Barley	cytosol, nucleus, plastid	0.0	0.0
Zm00001d009068_P002	Maize	extracellular	0.0	0.0

Protein Annotations

MapMan:35.1	ProteinID:CCB55054	ProteinID:CCB55054.1	UniProt:F6HK51	EMBL:FN595990	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0008541	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0031595	GO:GO:0043161
InterPro:PSMD12	PANTHER:PTHR10855	PANTHER:PTHR10855:SF1	UniParc:UPI0002108AE6	ArrayExpress:VIT_12s0035g00780	EnsemblPlantsGene:VIT_12s0035g00780
EnsemblPlants:VIT_12s0035g00780.t01	:	:	:	:	:

Description

No Description!

Coordinates

chr12:-:20255299..20256191

Molecular Weight (calculated)

10505.7 Da

IEP (calculated)

5.837

GRAVY (calculated)

-0.376

Length

92 amino acids

Sequence
(BLAST)

1: MEAQHNLKAE TEAPLNVEKQ IRLTGDVSGT KNNVIDILQL CFEARAWKTL NDQIALLWKR RDQLKQAVTA MVQQTMLYID QTPDIETKIG PI

Best Arabidopsis Sequence Match ( AT5G09900.2 )
(BLAST)

001: MANSGKLEAT IDRLLNEEKQ MRLAENVAGT RKAATEILQL CFDAKDWKLL NEQILNLSKK RGQLKQAVQS MVQQAMQYID QTPDIETRIE LIKTLNNVSA
101: GKIYVEIERA RLTKKLAKIK EEQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDFVRAQ ILSRKINPRV FDADTKKDKK KPKEGDNMVE
201: EAPADIPTLL ELKRIYYELM IRYYSHNNEY IEICRSYKAI YDIPSVKETP EQWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV
301: TMEVIQWTSL WNKYKDEFEK EKSMIGGSLG DKAGEDLKLR IIEHNILVVS KYYARITLKR LAELLCLSME EAEKHLSEMV VSKALIAKID RPSGIVCFQI
401: AKDSNEILNS WAGNLEKLLD LVEKSCHQIH KETMVHKAAL RP

Arabidopsis Description

EMB210726S proteasome regulatory subunit, putative (RPN5) [Source:UniProtKB/TrEMBL;Acc:B3H6B0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.