Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69878 | Canola | cytosol | 98.34 | 98.34 |
| CDX81147 | Canola | cytosol | 97.63 | 97.63 |
| CDY40066 | Canola | cytosol | 97.39 | 97.39 |
| CDY56539 | Canola | cytosol, nucleus | 86.26 | 95.29 |
| CDX85790 | Canola | cytosol | 97.16 | 91.52 |
| GSMUA_Achr2P16950_001 | Banana | cytosol | 82.23 | 82.23 |
| GSMUA_Achr4P23680_001 | Banana | cytosol | 80.57 | 80.57 |
| KRH59502 | Soybean | cytosol | 83.65 | 80.05 |
| PGSC0003DMT400060796 | Potato | cytosol | 82.46 | 78.73 |
| Solyc04g012040.2.1 | Tomato | cytosol | 82.23 | 78.51 |
| Solyc04g051370.2.1 | Tomato | nucleus | 81.99 | 78.28 |
| VIT_07s0031g01970.t01 | Wine grape | cytosol | 82.46 | 77.85 |
| Os03t0851300-01 | Rice | cytosol | 80.57 | 76.75 |
| TraesCS5D01G543600.1 | Wheat | golgi, unclear | 79.38 | 75.79 |
| KRH64121 | Soybean | cytosol | 79.38 | 75.62 |
| TraesCS4A01G329600.1 | Wheat | cytosol | 79.38 | 75.62 |
| EER90506 | Sorghum | cytosol | 79.15 | 75.39 |
| TraesCS5B01G544500.1 | Wheat | cytosol | 79.15 | 75.39 |
| Zm00001d009068_P002 | Maize | extracellular | 36.26 | 75.37 |
| KRH53822 | Soybean | cytosol | 79.15 | 75.06 |
| EES07793 | Sorghum | cytosol | 78.2 | 74.49 |
| Zm00001d012844_P002 | Maize | plasma membrane | 77.73 | 74.04 |
| PGSC0003DMT400050736 | Potato | cytosol | 82.23 | 73.67 |
| KRH43368 | Soybean | vacuole | 82.94 | 72.92 |
| Zm00001d018523_P003 | Maize | extracellular | 75.59 | 72.01 |
| AT5G09900.3 | Thale cress | nucleus | 76.07 | 69.48 |
| KRH43942 | Soybean | cytosol, mitochondrion, nucleus | 24.41 | 67.76 |
| CDY14507 | Canola | cytosol | 11.14 | 65.28 |
| VIT_12s0035g00780.t01 | Wine grape | cytosol | 10.43 | 47.83 |
| HORVU5Hr1G035770.1 | Barley | cytosol | 5.21 | 39.29 |
| VIT_08s0058g00020.t01 | Wine grape | cytosol | 7.58 | 39.02 |
| OQU77597 | Sorghum | plastid | 9.0 | 37.62 |
| OQU81472 | Sorghum | extracellular | 4.98 | 29.17 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:19.2.6.2.2.4 | UniProt:A0A078GA89 | EnsemblPlants:CDY21613 | ProteinID:CDY21613 | ProteinID:CDY21613.1 |
| EnsemblPlantsGene:GSBRNA2T00016083001 | InterPro:IPR000717 | InterPro:IPR036388 | InterPro:PCI_dom | PFAM:PF01399 | PFscan:PS50250 |
| InterPro:PSMD12 | PANTHER:PTHR10855 | PANTHER:PTHR10855:SF1 | SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 |
| UniParc:UPI0004EDF306 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : | : |
Description
BnaC09g46790DBnaC09g46790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GA89]
Coordinates
chrLK032122:-:493295..495978
Molecular Weight (calculated)
48548.4 Da
IEP (calculated)
8.250
GRAVY (calculated)
-0.274
Length
422 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLAENVAGT RKAATEILQL CFEAKDWKLL NEQILNLSKK RGQLKQAVQS MVQQAMQYID QTPDIETRIE LIKTLNNVAA GKIYVEIERA RLTRKLAKIK
101: EDQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDYVRAQ ILSRKINPRV FDADTKKDKK KPKEGENIVE EAPAGIPTLL ELKRIYYELM
201: IRYYSHNNEY LEICRSYKAI YDIPSVKETP EQWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV TMEVIQWTAL WNKYKGEFEN
301: EKSMVGGSLG DKAGEDLKLR IIEHNILVVS KYYSRITLKR LSELLCLSIE EAEKHLSEMV VSKALIAKID RPSGIVCFQI AKDSNEILNS WAVNLEKLLD
401: LVEKSCHQIH KETMVHKAVL RS
101: EDQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDYVRAQ ILSRKINPRV FDADTKKDKK KPKEGENIVE EAPAGIPTLL ELKRIYYELM
201: IRYYSHNNEY LEICRSYKAI YDIPSVKETP EQWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV TMEVIQWTAL WNKYKGEFEN
301: EKSMVGGSLG DKAGEDLKLR IIEHNILVVS KYYSRITLKR LSELLCLSIE EAEKHLSEMV VSKALIAKID RPSGIVCFQI AKDSNEILNS WAVNLEKLLD
401: LVEKSCHQIH KETMVHKAVL RS
001: MANSGKLEAT IDRLLNEEKQ MRLAENVAGT RKAATEILQL CFDAKDWKLL NEQILNLSKK RGQLKQAVQS MVQQAMQYID QTPDIETRIE LIKTLNNVSA
101: GKIYVEIERA RLTKKLAKIK EEQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDFVRAQ ILSRKINPRV FDADTKKDKK KPKEGDNMVE
201: EAPADIPTLL ELKRIYYELM IRYYSHNNEY IEICRSYKAI YDIPSVKETP EQWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV
301: TMEVIQWTSL WNKYKDEFEK EKSMIGGSLG DKAGEDLKLR IIEHNILVVS KYYARITLKR LAELLCLSME EAEKHLSEMV VSKALIAKID RPSGIVCFQI
401: AKDSNEILNS WAGNLEKLLD LVEKSCHQIH KETMVHKAAL RP
101: GKIYVEIERA RLTKKLAKIK EEQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDFVRAQ ILSRKINPRV FDADTKKDKK KPKEGDNMVE
201: EAPADIPTLL ELKRIYYELM IRYYSHNNEY IEICRSYKAI YDIPSVKETP EQWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV
301: TMEVIQWTSL WNKYKDEFEK EKSMIGGSLG DKAGEDLKLR IIEHNILVVS KYYARITLKR LAELLCLSME EAEKHLSEMV VSKALIAKID RPSGIVCFQI
401: AKDSNEILNS WAGNLEKLLD LVEKSCHQIH KETMVHKAAL RP
Arabidopsis Description
EMB210726S proteasome regulatory subunit, putative (RPN5) [Source:UniProtKB/TrEMBL;Acc:B3H6B0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.