Factsheet for PGSC0003DMT400050736

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g051370.2.1	Tomato	nucleus	92.36	98.42
PGSC0003DMT400060796	Potato	cytosol	84.5	90.05
VIT_07s0031g01970.t01	Wine grape	cytosol	80.89	85.23
KRH59502	Soybean	cytosol	79.62	85.03
CDY40066	Canola	cytosol	74.52	83.18
GSMUA_Achr2P16950_001	Banana	cytosol	74.52	83.18
CDX81147	Canola	cytosol	74.31	82.94
KRH64121	Soybean	cytosol	77.92	82.84
CDY56539	Canola	cytosol, nucleus	66.88	82.46
Bra006038.1-P	Field mustard	cytosol	73.67	82.23
CDY21613	Canola	cytosol	73.67	82.23
CDX69878	Canola	cytosol	73.46	81.99
GSMUA_Achr4P23680_001	Banana	cytosol	73.46	81.99
Bra009074.1-P	Field mustard	cytosol	73.25	81.75
KRH53822	Soybean	cytosol	76.86	81.35
Os03t0851300-01	Rice	cytosol	76.01	80.81
CDX85790	Canola	cytosol	76.43	80.36
Bra028611.1-P	Field mustard	cytosol	76.43	80.36
AT5G64760.1	Thale cress	cytosol	75.16	80.09
EER90506	Sorghum	cytosol	74.52	79.23
TraesCS5D01G543600.1	Wheat	golgi, unclear	73.89	78.73
EES07793	Sorghum	cytosol	73.67	78.33
Zm00001d012844_P002	Maize	plasma membrane	73.67	78.33
TraesCS4A01G329600.1	Wheat	cytosol	73.46	78.1
KRH43368	Soybean	vacuole	79.19	77.71
TraesCS5B01G544500.1	Wheat	cytosol	73.04	77.65
Zm00001d018523_P003	Maize	extracellular	72.19	76.75
Bra026640.1-P	Field mustard	cytosol	49.89	75.32
Zm00001d009068_P002	Maize	extracellular	31.42	72.91
KRH43942	Soybean	cytosol, mitochondrion, nucleus	23.14	71.71
VIT_12s0035g00780.t01	Wine grape	cytosol	13.16	67.39
AT5G09900.3	Thale cress	nucleus	60.3	61.47
VIT_08s0058g00020.t01	Wine grape	cytosol	10.4	59.76
CDY14507	Canola	cytosol	8.7	56.94
HORVU5Hr1G035770.1	Barley	cytosol	5.31	44.64
OQU77597	Sorghum	plastid	8.49	39.6
OQU81472	Sorghum	extracellular	4.88	31.94

Protein Annotations

EnsemblPlants:PGSC0003DMT400050736	EnsemblPlantsGene:PGSC0003DMG400019701	EntrezGene:102602759	Gene3D:1.10.10.10	InterPro:IPR000717	InterPro:IPR036388
InterPro:PCI_dom	InterPro:PSMD12	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	PANTHER:PTHR10855	PANTHER:PTHR10855:SF1
PFAM:PF01399	PFscan:PS50250	PGSC:PGSC0003DMG400019701	SEG:seg	SMART:SM00088	SMART:SM00753
SUPFAM:SSF46785	UniParc:UPI0002950CFE	UniProt:M1BQR5	MapMan:19.2.6.2.2.4	:	:

Description

26S proteasome subunit RPN5b [Source:PGSC_GENE;Acc:PGSC0003DMG400019701]

Coordinates

chr4:+:55548157..55556517

Molecular Weight (calculated)

53735.5 Da

IEP (calculated)

7.921

GRAVY (calculated)

-0.237

Length

471 amino acids

Sequence
(BLAST)

001: MEGDGKLEAQ IEALLSVEKQ MRQAGDVAST RKAATDILQL CFEARAWKTL NEQIVLLSKR RGQLKQALAS SVNAWAIGYQ CACVLRKSGN HTRVFAVQAM
101: VQQAMQYIDQ TPDIDTKIEL IKTLNSVSAG KIYVEIERAR LIKKLAKIKE EQQLIGEAAD LMQEVAVETF GAMAKTEKIA FILEQVRLCL DHKDYVRAQI
201: LSRKINPRVF EADPSKEKKK AKEGENVVEE PAADIPSLPE LKQIYYQLMI RYYSHSNDYL EICRCYKAIY EIPSVKEDPA QWIPVLRKIC WYLVLSPHDS
301: MQSSLHNSTL EDKNLSEIPH FRLLLKQLIT MEVIQWTALW NTFKDEFENE KNMPGGTLGD KAAEDLKLRV IEHNILVVSK YYSRITLKRL AVLLCLDIQE
401: VEKHLSEMVV SKALVAKIDR PMGIVCFQPP KDSNDILNSW ASNLEKLLDL VEKSCHQIHK ETMVHKAALK A

Best Arabidopsis Sequence Match ( AT5G09900.2 )
(BLAST)

001: MANSGKLEAT IDRLLNEEKQ MRLAENVAGT RKAATEILQL CFDAKDWKLL NEQILNLSKK RGQLKQAVQS MVQQAMQYID QTPDIETRIE LIKTLNNVSA
101: GKIYVEIERA RLTKKLAKIK EEQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDFVRAQ ILSRKINPRV FDADTKKDKK KPKEGDNMVE
201: EAPADIPTLL ELKRIYYELM IRYYSHNNEY IEICRSYKAI YDIPSVKETP EQWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV
301: TMEVIQWTSL WNKYKDEFEK EKSMIGGSLG DKAGEDLKLR IIEHNILVVS KYYARITLKR LAELLCLSME EAEKHLSEMV VSKALIAKID RPSGIVCFQI
401: AKDSNEILNS WAGNLEKLLD LVEKSCHQIH KETMVHKAAL RP

Arabidopsis Description

EMB210726S proteasome regulatory subunit, putative (RPN5) [Source:UniProtKB/TrEMBL;Acc:B3H6B0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.