CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 1
nucleus 1
extracellular 2
endoplasmic reticulum 2
vacuole 3
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	mitochondrion
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59502	Soybean	cytosol	90.62	98.64
KRH64121	Soybean	cytosol	82.29	89.16
VIT_07s0031g01970.t01	Wine grape	cytosol	81.46	87.47
KRH53822	Soybean	cytosol	81.04	87.42
GSMUA_Achr2P16950_001	Banana	cytosol	76.46	86.97
GSMUA_Achr4P23680_001	Banana	cytosol	75.0	85.31
Os03t0851300-01	Rice	cytosol	77.92	84.42
Solyc04g051370.2.1	Tomato	nucleus	77.71	84.39
Solyc04g012040.2.1	Tomato	cytosol	77.5	84.16
PGSC0003DMT400060796	Potato	cytosol	77.29	83.94
CDX81147	Canola	cytosol	73.54	83.65
CDY40066	Canola	cytosol	73.54	83.65
CDX69878	Canola	cytosol	73.12	83.18
Bra009074.1-P	Field mustard	cytosol	72.92	82.94
CDY21613	Canola	cytosol	72.92	82.94
CDY56539	Canola	cytosol, nucleus	65.83	82.72
EER90506	Sorghum	cytosol	76.25	82.62
Bra006038.1-P	Field mustard	cytosol	72.5	82.46
EES07793	Sorghum	cytosol	76.04	82.39
TraesCS5D01G543600.1	Wheat	golgi, unclear	75.83	82.35
TraesCS4A01G329600.1	Wheat	cytosol	75.62	81.94
TraesCS5B01G544500.1	Wheat	cytosol	75.42	81.72
Zm00001d012844_P002	Maize	plasma membrane	75.21	81.49
Zm00001d018523_P003	Maize	extracellular	75.0	81.26
CDX85790	Canola	cytosol	75.62	81.03
Bra028611.1-P	Field mustard	cytosol	75.62	81.03
Zm00001d009068_P002	Maize	extracellular	33.54	79.31
PGSC0003DMT400050736	Potato	cytosol	77.71	79.19
AT5G64760.1	Thale cress	cytosol	72.92	79.19
Bra026640.1-P	Field mustard	cytosol	50.83	78.21
HORVU5Hr1G122560.2	Barley	cytosol, nucleus	74.79	77.71
HORVU5Hr1G122430.1	Barley	plastid	76.67	76.03
KRH43942	Soybean	cytosol, mitochondrion, nucleus	23.96	75.66
VIT_12s0035g00780.t01	Wine grape	cytosol	13.12	68.48
VIT_08s0058g00020.t01	Wine grape	cytosol	10.83	63.41
HORVU1Hr1G003160.1	Barley	cytosol, nucleus, plastid	25.83	63.27
AT5G09900.3	Thale cress	nucleus	60.21	62.55
CDY14507	Canola	cytosol	7.92	52.78
OQU77597	Sorghum	plastid	7.5	35.64
OQU81472	Sorghum	extracellular	3.75	25.0

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100791893	MapMan:19.2.6.2.2.4	EMBL:ACUP02004851	EnsemblPlantsGene:GLYMA_08G145200	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0008541	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0031595	GO:GO:0043161
UniProt:I1KTD4	InterPro:IPR000717	InterPro:IPR036388	EnsemblPlants:KRH43368	ProteinID:KRH43368	ProteinID:KRH43368.1
InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250	InterPro:PSMD12	PANTHER:PTHR10855	PANTHER:PTHR10855:SF1
SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI000294BF5A	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:11033364..11039570

Molecular Weight (calculated)

54734.8 Da

IEP (calculated)

8.351

GRAVY (calculated)

-0.177

Length

480 amino acids

Sequence
(BLAST)

001: MKNSPSFSSH LFYLSFLPLP IFNNSRLLPR SLSLAHNPTM ANTGNLDAAI EQLLNVEKQM RLAGDVAGTR KAATDILQLC FDARAWKTLN DQIVVLSKRR
101: GQLKQAVTAM VQQAMQYIDE TPDIETRIEL IKTLNSVSAG KIYVEIERAR LIKKLAKIKE EQGLIAEAAD LMQEIAVETF GAMAKTEKIA FILEQVRLCL
201: DRQDYVRAQI LSRKISPRVF DADLSKEKKK PKEGDNVVEE APADIPSLLE LKQIYYELMI RYYSHNNDYL EICRCYKAIY EIPSVKEDPA KWIPILRKIC
301: WYLVLAPYDP MQSSFLNSTL ADKNLSEIPN FKLLLKQLVT MEVIQWTTLW DTYKSDFENE KASGKSLGEK AAEDLRQRII EHNILVVSKY YARITLKRLA
401: ELLCLSVQDA EKHLSDMVVS KALVAKIDRP LGIVCFQTAK DSNDILNSWA ANLEKLLDLV EKSCHQIHKE TMVHKAALKV

Best Arabidopsis Sequence Match ( AT5G09900.2 )
(BLAST)

001: MANSGKLEAT IDRLLNEEKQ MRLAENVAGT RKAATEILQL CFDAKDWKLL NEQILNLSKK RGQLKQAVQS MVQQAMQYID QTPDIETRIE LIKTLNNVSA
101: GKIYVEIERA RLTKKLAKIK EEQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDFVRAQ ILSRKINPRV FDADTKKDKK KPKEGDNMVE
201: EAPADIPTLL ELKRIYYELM IRYYSHNNEY IEICRSYKAI YDIPSVKETP EQWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV
301: TMEVIQWTSL WNKYKDEFEK EKSMIGGSLG DKAGEDLKLR IIEHNILVVS KYYARITLKR LAELLCLSME EAEKHLSEMV VSKALIAKID RPSGIVCFQI
401: AKDSNEILNS WAGNLEKLLD LVEKSCHQIH KETMVHKAAL RP

Arabidopsis Description

EMB210726S proteasome regulatory subunit, putative (RPN5) [Source:UniProtKB/TrEMBL;Acc:B3H6B0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.