Factsheet for HORVU1Hr1G003160.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G035770.1	Barley	cytosol	16.33	57.14
TraesCS5D01G543600.1	Wheat	golgi, unclear	82.65	36.65
TraesCS5B01G544500.1	Wheat	cytosol	82.65	36.57
TraesCS4A01G329600.1	Wheat	cytosol	82.65	36.57
HORVU5Hr1G122560.2	Barley	cytosol, nucleus	81.63	34.63
Os03t0851300-01	Rice	cytosol	77.55	34.31
HORVU5Hr1G122430.1	Barley	plastid	83.16	33.68
EER90506	Sorghum	cytosol	75.51	33.41
GSMUA_Achr2P16950_001	Banana	cytosol	69.39	32.23
Zm00001d012844_P002	Maize	plasma membrane	72.45	32.05
EES07793	Sorghum	cytosol	71.94	31.83
GSMUA_Achr4P23680_001	Banana	cytosol	67.86	31.52
Zm00001d018523_P003	Maize	extracellular	69.39	30.7
VIT_07s0031g01970.t01	Wine grape	cytosol	67.86	29.75
Zm00001d009068_P002	Maize	extracellular	30.1	29.06
KRH64121	Soybean	cytosol	64.8	28.67
KRH59502	Soybean	cytosol	64.29	28.57
KRH53822	Soybean	cytosol	63.78	28.09
KRH43368	Soybean	vacuole	63.27	25.83
KRH43942	Soybean	cytosol, mitochondrion, nucleus	18.88	24.34
VIT_08s0058g00020.t01	Wine grape	cytosol	0.0	0.0
VIT_12s0035g00780.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:HORVU1Hr1G003160.1	EnsemblPlantsGene:HORVU1Hr1G003160	Gene3D:1.10.10.10	InterPro:IPR000717	InterPro:IPR036388	InterPro:PCI_dom
InterPro:PSMD12	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	PANTHER:PTHR10855	PANTHER:PTHR10855:SF1	PFAM:PF01399
PFscan:PS50250	SEG:seg	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI000B46DB5F
UniProt:A0A287EH95	MapMan:19.2.6.2.2.4	:	:	:	:

Description

No Description!

Coordinates

chrchr1H:+:6616292..6617247

Molecular Weight (calculated)

22005.5 Da

IEP (calculated)

7.150

GRAVY (calculated)

-0.257

Length

196 amino acids

Sequence
(BLAST)

001: CPCSPSSCRP PSPSFGLGSS HAPSQDQTSL YHPSCEDKNL SEVPNIRLLL KQVVTMEVIQ WTKLWEFFKD EYENEKNLLG GALGTKAAED LKLRIIEHKI
101: LVVSNYYSRI SLKRLADLLC LSLQEAENHI SDMVNSEALI AKINRPMGIV SFRTAQDSNG VLNSWASNLE KLMDLVEKSC HQIHKETMIH KAVLKA

Best Arabidopsis Sequence Match ( AT5G09900.1 )
(BLAST)

001: MGDSGKLEAT IDRLLNEEKQ MRLAENVAGT RKAATEILQL CFDAKDWKLL NEQILNLSKK RGQLKQAVQS MVQQAMQYID QTPDIETRIE LIKTLNNVSA
101: GKIYVEIERA RLTKKLAKIK EEQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDFVRAQ ILSRKINPRV FDADTKKDKK KPKEGDNMVE
201: EAPADIPTLL ELKRIYYELM IRYYSHNNEY IEICRSYKAI YDIPSVKETP EQWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV
301: TMEVIQWTSL WNKYKDEFEK EKSMIGGSLG DKAGEDLKLR IIEHNILVVS KYYARITLKR LAELLCLSME EAEKHLSEMV VSKALIAKID RPSGIVCFQI
401: AKDSNEILNS WAGNLEKLLD LVEKSCHQIH KETMVHKAAL RP

Arabidopsis Description

EMB210726S proteasome regulatory subunit, putative (RPN5) [Source:UniProtKB/TrEMBL;Acc:B3H6B0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.