Factsheet for VIT_08s0058g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0035g00780.t01	Wine grape	cytosol	81.71	72.83
VIT_07s0031g01970.t01	Wine grape	cytosol	74.39	13.65
Bra026640.1-P	Field mustard	cytosol	51.22	13.46
KRH59502	Soybean	cytosol	63.41	11.79
KRH64121	Soybean	cytosol	62.2	11.51
KRH53822	Soybean	cytosol	60.98	11.24
PGSC0003DMT400060796	Potato	cytosol	59.76	11.09
Solyc04g051370.2.1	Tomato	nucleus	58.54	10.86
Solyc04g012040.2.1	Tomato	cytosol	58.54	10.86
KRH43368	Soybean	vacuole	63.41	10.83
PGSC0003DMT400050736	Potato	cytosol	59.76	10.4
Zm00001d012844_P002	Maize	plasma membrane	56.1	10.38
Zm00001d018523_P003	Maize	extracellular	56.1	10.38
Os03t0851300-01	Rice	cytosol	54.88	10.16
TraesCS5D01G543600.1	Wheat	golgi, unclear	53.66	9.95
TraesCS5B01G544500.1	Wheat	cytosol	51.22	9.48
TraesCS4A01G329600.1	Wheat	cytosol	51.22	9.48
CDX85790	Canola	cytosol	51.22	9.38
Bra028611.1-P	Field mustard	cytosol	51.22	9.38
HORVU5Hr1G122430.1	Barley	plastid	53.66	9.09
HORVU5Hr1G122560.2	Barley	cytosol, nucleus	51.22	9.09
AT5G64760.1	Thale cress	cytosol	48.78	9.05
GSMUA_Achr2P16950_001	Banana	cytosol	46.34	9.0
GSMUA_Achr4P23680_001	Banana	cytosol	45.12	8.77
AT5G09900.3	Thale cress	nucleus	48.78	8.66
CDY40066	Canola	cytosol	39.02	7.58
CDY21613	Canola	cytosol	39.02	7.58
CDX81147	Canola	cytosol	39.02	7.58
CDX69878	Canola	cytosol	39.02	7.58
Bra006038.1-P	Field mustard	cytosol	39.02	7.58
Bra009074.1-P	Field mustard	cytosol	37.8	7.35
CDY56539	Canola	cytosol, nucleus	7.32	1.57
KRH43942	Soybean	cytosol, mitochondrion, nucleus	0.0	0.0
OQU77597	Sorghum	plastid	0.0	0.0
OQU81472	Sorghum	extracellular	0.0	0.0
HORVU1Hr1G003160.1	Barley	cytosol, nucleus, plastid	0.0	0.0
CDY14507	Canola	cytosol	0.0	0.0
Zm00001d009068_P002	Maize	extracellular	0.0	0.0

Protein Annotations

MapMan:35.2	ProteinID:CBI18150	ProteinID:CBI18150.3	UniProt:D7SQX2	EMBL:FN594967	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0008541	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0031595	GO:GO:0043161
InterPro:PSMD12	PANTHER:PTHR10855	PANTHER:PTHR10855:SF1	UniParc:UPI0001BE1529	ArrayExpress:VIT_08s0058g00020	EnsemblPlantsGene:VIT_08s0058g00020
EnsemblPlants:VIT_08s0058g00020.t01	:	:	:	:	:

Description

No Description!

Coordinates

chr8:+:8340041..8341007

Molecular Weight (calculated)

9483.4 Da

IEP (calculated)

8.506

GRAVY (calculated)

-0.441

Length

82 amino acids

Sequence
(BLAST)

1: MEAQHNLKAE TEALLNVEKQ IRLAGDVSGT KNNVTDILQL CFEARAWKTL NDQIAFLWKR RDQLKQTVTT MVQYLVFKNS SE

Best Arabidopsis Sequence Match ( AT5G64760.1 )
(BLAST)

001: MEESRQLESS IDRLLNEEKQ MRLAENVAGT RKAATEILKL CFEAKDWKLL NEQILNLSKK RGQLKQAVQS MVQQAMQYID QTLDIETRIE LIKTLNNVAA
101: GKIYVEIERA RLTKMLAKIK EEQGLIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDQKDFVRAQ ILSRKINPRV FDADTTKEKK KPKEGENMVE
201: EAPADIPTLL VLKRIYYELM IRYYSHNNEY IEICRSYKAI YDIPSVKENP EQWIPVLRKI CWFLALAPHD PMQSSLLNAT LEDKKLSEIP DFKMLLKQIV
301: TMEVIQWTSL WNKYKDEFEN EKNMIGGSLG DKAGEDLKLR IIEHNILVVS KYYSRITFKR LAELLCLTTE EAEKHLSEMV VSKALIAKID RPSGIICFQI
401: VKDSNEILNS WATNLEKLLD LVEKSCHQIH KETMVHKVAL RA

Arabidopsis Description

RPN5B26S proteasome non-ATPase regulatory subunit 12 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q8VWK0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.