Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g012040.2.1 | Tomato | cytosol | 80.77 | 80.77 |
| PGSC0003DMT400060796 | Potato | cytosol | 80.77 | 80.77 |
| Solyc04g051370.2.1 | Tomato | nucleus | 80.09 | 80.09 |
| KRH59502 | Soybean | cytosol | 79.64 | 79.82 |
| GSMUA_Achr2P16950_001 | Banana | cytosol | 75.79 | 79.38 |
| GSMUA_Achr4P23680_001 | Banana | cytosol | 75.11 | 78.67 |
| VIT_07s0031g01970.t01 | Wine grape | cytosol | 79.41 | 78.52 |
| KRH64121 | Soybean | cytosol | 77.15 | 76.98 |
| Os03t0851300-01 | Rice | cytosol | 76.92 | 76.75 |
| TraesCS5D01G543600.1 | Wheat | golgi, unclear | 76.24 | 76.24 |
| KRH53822 | Soybean | cytosol | 76.7 | 76.18 |
| TraesCS4A01G329600.1 | Wheat | cytosol | 75.79 | 75.62 |
| TraesCS5B01G544500.1 | Wheat | cytosol | 75.34 | 75.17 |
| EER90506 | Sorghum | cytosol | 75.34 | 75.17 |
| PGSC0003DMT400050736 | Potato | cytosol | 80.09 | 75.16 |
| EES07793 | Sorghum | cytosol | 75.11 | 74.94 |
| Zm00001d012844_P002 | Maize | plasma membrane | 74.89 | 74.72 |
| Zm00001d018523_P003 | Maize | extracellular | 73.53 | 73.36 |
| KRH43368 | Soybean | vacuole | 79.19 | 72.92 |
| Zm00001d009068_P002 | Maize | extracellular | 33.26 | 72.41 |
| AT5G09900.3 | Thale cress | nucleus | 74.89 | 71.64 |
| KRH43942 | Soybean | cytosol, mitochondrion, nucleus | 23.3 | 67.76 |
| CDY14507 | Canola | cytosol | 10.18 | 62.5 |
| VIT_12s0035g00780.t01 | Wine grape | cytosol | 11.31 | 54.35 |
| VIT_08s0058g00020.t01 | Wine grape | cytosol | 9.05 | 48.78 |
| HORVU5Hr1G035770.1 | Barley | cytosol | 5.43 | 42.86 |
| OQU77597 | Sorghum | plastid | 8.82 | 38.61 |
| OQU81472 | Sorghum | extracellular | 5.2 | 31.94 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:19.2.6.2.2.4 | EntrezGene:836597 | ProteinID:AED97947.1 | ArrayExpress:AT5G64760 | EnsemblPlantsGene:AT5G64760 |
| RefSeq:AT5G64760 | TAIR:AT5G64760 | RefSeq:AT5G64760-TAIR-G | EnsemblPlants:AT5G64760.1 | TAIR:AT5G64760.1 | EMBL:AY062093 |
| EMBL:AY062113 | EMBL:AY124872 | EMBL:AY230833 | Unigene:At.27199 | ProteinID:BAB10309.1 | GO:GO:0000502 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008541 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| GO:GO:0030163 | GO:GO:0031595 | GO:GO:0043161 | InterPro:IPR000717 | InterPro:IPR036388 | RefSeq:NP_568994.2 |
| InterPro:PCI_dom | PFAM:PF01399 | PO:PO:0000003 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50250 | InterPro:PSMD12 | PANTHER:PTHR10855 |
| PANTHER:PTHR10855:SF1 | UniProt:Q8VWK0 | Symbol:RPN5B | SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 |
| UniParc:UPI00000A25D9 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : | : |
Description
RPN5B26S proteasome non-ATPase regulatory subunit 12 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q8VWK0]
Coordinates
chr5:-:25893780..25896586
Molecular Weight (calculated)
51120.6 Da
IEP (calculated)
7.143
GRAVY (calculated)
-0.298
Length
442 amino acids
Sequence
(BLAST)
(BLAST)
001: MEESRQLESS IDRLLNEEKQ MRLAENVAGT RKAATEILKL CFEAKDWKLL NEQILNLSKK RGQLKQAVQS MVQQAMQYID QTLDIETRIE LIKTLNNVAA
101: GKIYVEIERA RLTKMLAKIK EEQGLIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDQKDFVRAQ ILSRKINPRV FDADTTKEKK KPKEGENMVE
201: EAPADIPTLL VLKRIYYELM IRYYSHNNEY IEICRSYKAI YDIPSVKENP EQWIPVLRKI CWFLALAPHD PMQSSLLNAT LEDKKLSEIP DFKMLLKQIV
301: TMEVIQWTSL WNKYKDEFEN EKNMIGGSLG DKAGEDLKLR IIEHNILVVS KYYSRITFKR LAELLCLTTE EAEKHLSEMV VSKALIAKID RPSGIICFQI
401: VKDSNEILNS WATNLEKLLD LVEKSCHQIH KETMVHKVAL RA
101: GKIYVEIERA RLTKMLAKIK EEQGLIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDQKDFVRAQ ILSRKINPRV FDADTTKEKK KPKEGENMVE
201: EAPADIPTLL VLKRIYYELM IRYYSHNNEY IEICRSYKAI YDIPSVKENP EQWIPVLRKI CWFLALAPHD PMQSSLLNAT LEDKKLSEIP DFKMLLKQIV
301: TMEVIQWTSL WNKYKDEFEN EKNMIGGSLG DKAGEDLKLR IIEHNILVVS KYYSRITFKR LAELLCLTTE EAEKHLSEMV VSKALIAKID RPSGIICFQI
401: VKDSNEILNS WATNLEKLLD LVEKSCHQIH KETMVHKVAL RA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.