CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53822	Soybean	cytosol	95.49	95.06
KRH59502	Soybean	cytosol	89.16	89.57
VIT_07s0031g01970.t01	Wine grape	cytosol	86.23	85.46
GSMUA_Achr2P16950_001	Banana	cytosol	81.26	85.31
Solyc04g051370.2.1	Tomato	nucleus	83.3	83.48
GSMUA_Achr4P23680_001	Banana	cytosol	79.23	83.18
KRH43942	Soybean	cytosol, mitochondrion, nucleus	28.44	82.89
PGSC0003DMT400060796	Potato	cytosol	82.39	82.58
Solyc04g012040.2.1	Tomato	cytosol	82.39	82.58
KRH43368	Soybean	vacuole	89.16	82.29
CDY56539	Canola	cytosol, nucleus	69.3	80.37
Os03t0851300-01	Rice	cytosol	80.36	80.36
EER90506	Sorghum	cytosol	80.36	80.36
CDX81147	Canola	cytosol	76.52	80.33
CDY40066	Canola	cytosol	76.52	80.33
EES07793	Sorghum	cytosol	80.14	80.14
TraesCS5D01G543600.1	Wheat	golgi, unclear	79.46	79.64
CDX69878	Canola	cytosol	75.85	79.62
Bra006038.1-P	Field mustard	cytosol	75.85	79.62
CDY21613	Canola	cytosol	75.62	79.38
Bra009074.1-P	Field mustard	cytosol	75.62	79.38
Zm00001d009068_P002	Maize	extracellular	36.34	79.31
Zm00001d012844_P002	Maize	plasma membrane	79.23	79.23
TraesCS4A01G329600.1	Wheat	cytosol	79.01	79.01
TraesCS5B01G544500.1	Wheat	cytosol	78.78	78.78
CDX85790	Canola	cytosol	79.01	78.12
Bra028611.1-P	Field mustard	cytosol	79.01	78.12
Zm00001d018523_P003	Maize	extracellular	78.1	78.1
PGSC0003DMT400050736	Potato	cytosol	82.84	77.92
AT5G64760.1	Thale cress	cytosol	76.98	77.15
Bra026640.1-P	Field mustard	cytosol	53.72	76.28
HORVU5Hr1G122560.2	Barley	cytosol, nucleus	78.1	74.89
HORVU5Hr1G122430.1	Barley	plastid	79.01	72.31
VIT_12s0035g00780.t01	Wine grape	cytosol	13.77	66.3
HORVU1Hr1G003160.1	Barley	cytosol, nucleus, plastid	28.67	64.8
VIT_08s0058g00020.t01	Wine grape	cytosol	11.51	62.2
AT5G09900.3	Thale cress	nucleus	62.98	60.39
CDY14507	Canola	cytosol	9.03	55.56
OQU77597	Sorghum	plastid	8.35	36.63
OQU81472	Sorghum	extracellular	4.29	26.39

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100793755	MapMan:19.2.6.2.2.4	EMBL:ACUP02002741	EnsemblPlantsGene:GLYMA_04G217500	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0008541	GO:GO:0009056	GO:GO:0009987
GO:GO:0019538	GO:GO:0031595	GO:GO:0043161	UniProt:I1JY67	InterPro:IPR000717	InterPro:IPR036388
EnsemblPlants:KRH64121	ProteinID:KRH64121	ProteinID:KRH64121.1	InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250
InterPro:PSMD12	PANTHER:PTHR10855	PANTHER:PTHR10855:SF1	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785
UniParc:UPI000233997B	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:48841385..48847304

Molecular Weight (calculated)

50792.1 Da

IEP (calculated)

7.438

GRAVY (calculated)

-0.233

Length

443 amino acids

Sequence
(BLAST)

001: MAMENAGNLE AAIEQLLNAE KQARLAGDVA ATRNAVTEIL RMCFEARAWK TLNDQIVLLS KRRGQLKQAV TAMVQQAMQY IDETPDLETR IELIKILNSV
101: SAGKIYVEIE RARLIKKLAK IKEEQGLIAE AADLMQEIAV ETFGAMAKTE KIAFILEQVR LCLDRQDYVR AQILSRKIST RVFDADVSKE KKKPKEGDNV
201: VEEAPVDIPS LPELKRIYYE LMIRYYSHKN DYLEICRCYK AIYEIPSVKE NPAEWIPILR KICWYLVLSP HDPMQSSLLN STLEDKNLSE IPNFKLLLKQ
301: LVTMEVIQWT TLWDSYKDEF ENESNLGKNL GEKAAEDLRE RVIEHNIIVI SKYYGKITLK RLAELLCLSV QKAEKHLSDM VVSKALVAKI DRPMGIVCFQ
401: RAKDSNDVLN SWAANLERLL DLVEKSCHQI HKETMVHKAA LKV

Best Arabidopsis Sequence Match ( AT5G09900.2 )
(BLAST)

001: MANSGKLEAT IDRLLNEEKQ MRLAENVAGT RKAATEILQL CFDAKDWKLL NEQILNLSKK RGQLKQAVQS MVQQAMQYID QTPDIETRIE LIKTLNNVSA
101: GKIYVEIERA RLTKKLAKIK EEQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDFVRAQ ILSRKINPRV FDADTKKDKK KPKEGDNMVE
201: EAPADIPTLL ELKRIYYELM IRYYSHNNEY IEICRSYKAI YDIPSVKETP EQWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV
301: TMEVIQWTSL WNKYKDEFEK EKSMIGGSLG DKAGEDLKLR IIEHNILVVS KYYARITLKR LAELLCLSME EAEKHLSEMV VSKALIAKID RPSGIVCFQI
401: AKDSNEILNS WAGNLEKLLD LVEKSCHQIH KETMVHKAAL RP

Arabidopsis Description

EMB210726S proteasome regulatory subunit, putative (RPN5) [Source:UniProtKB/TrEMBL;Acc:B3H6B0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.