Factsheet for Bra026640.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009074.1-P	Field mustard	cytosol	87.18	64.45
Bra028611.1-P	Field mustard	cytosol	92.31	64.29
Bra006038.1-P	Field mustard	cytosol	84.94	62.8
AT5G09900.3	Thale cress	nucleus	89.74	60.61
VIT_12s0035g00780.t01	Wine grape	cytosol	16.99	57.61
KRH59502	Soybean	cytosol	78.53	55.56
Zm00001d009068_P002	Maize	extracellular	35.9	55.17
GSMUA_Achr2P16950_001	Banana	cytosol	73.72	54.5
KRH64121	Soybean	cytosol	76.28	53.72
Os03t0851300-01	Rice	cytosol	75.96	53.5
Solyc04g012040.2.1	Tomato	cytosol	75.64	53.39
EES07793	Sorghum	cytosol	75.64	53.27
VIT_07s0031g01970.t01	Wine grape	cytosol	76.28	53.24
GSMUA_Achr4P23680_001	Banana	cytosol	71.79	53.08
PGSC0003DMT400060796	Potato	cytosol	75.0	52.94
Solyc04g051370.2.1	Tomato	nucleus	75.0	52.94
EER90506	Sorghum	cytosol	75.0	52.82
Zm00001d012844_P002	Maize	plasma membrane	74.68	52.6
KRH53822	Soybean	cytosol	75.0	52.58
TraesCS5D01G543600.1	Wheat	golgi, unclear	74.36	52.49
TraesCS4A01G329600.1	Wheat	cytosol	74.36	52.37
Zm00001d018523_P003	Maize	extracellular	73.72	51.92
TraesCS5B01G544500.1	Wheat	cytosol	73.72	51.92
KRH43942	Soybean	cytosol, mitochondrion, nucleus	25.0	51.32
VIT_08s0058g00020.t01	Wine grape	cytosol	13.46	51.22
KRH43368	Soybean	vacuole	78.21	50.83
PGSC0003DMT400050736	Potato	cytosol	75.32	49.89
OQU77597	Sorghum	plastid	5.45	16.83
OQU81472	Sorghum	extracellular	0.96	4.17
HORVU5Hr1G035770.1	Barley	cytosol	0.64	3.57

Protein Annotations

Gene3D:1.20.1420.10	MapMan:19.2.6.2.2.4	EnsemblPlantsGene:Bra026640	EnsemblPlants:Bra026640.1	EnsemblPlants:Bra026640.1-P	GO:GO:0000502
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
GO:GO:0007275	GO:GO:0008150	GO:GO:0009506	UniProt:M4ECY0	InterPro:PSMD12	PANTHER:PTHR10855
PANTHER:PTHR10855:SF1	UniParc:UPI0002546A9F	SEG:seg	:	:	:

Description

AT5G09900 (E=2e-143) EMB2107, RPN5A, MSA | EMB2107 (EMBRYO DEFECTIVE 2107)

Coordinates

chrA02:-:21018350..21019470

Molecular Weight (calculated)

36002.6 Da

IEP (calculated)

7.381

GRAVY (calculated)

-0.448

Length

312 amino acids

Sequence
(BLAST)

001: MGDSGNLEAS IDRLLNEEKQ MRLAENVAGT RKAATEILQL CFEAKDWKLL NEQILNLSKK RGQLKQAVQS MVQQAMQYID QTPDIETRIE LIKTLNNVSA
101: GKIYVEIERA RLTRKLAKIK EDQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDYVRAQ ILSRKINPRV FDADTKKDKK KPKEGENIVE
201: EAPADIPTLL ELKRIYYELM IRYYSHNNEY LEICRSYKSI YDIPSVKETP EQWIPILRKI CWFLVLAPHD PMQSSLLNAT LEDKNLPQGN HGSQSRTQIL
301: SMSFIGFRET FF

Best Arabidopsis Sequence Match ( AT5G09900.1 )
(BLAST)

001: MGDSGKLEAT IDRLLNEEKQ MRLAENVAGT RKAATEILQL CFDAKDWKLL NEQILNLSKK RGQLKQAVQS MVQQAMQYID QTPDIETRIE LIKTLNNVSA
101: GKIYVEIERA RLTKKLAKIK EEQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDFVRAQ ILSRKINPRV FDADTKKDKK KPKEGDNMVE
201: EAPADIPTLL ELKRIYYELM IRYYSHNNEY IEICRSYKAI YDIPSVKETP EQWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV
301: TMEVIQWTSL WNKYKDEFEK EKSMIGGSLG DKAGEDLKLR IIEHNILVVS KYYARITLKR LAELLCLSME EAEKHLSEMV VSKALIAKID RPSGIVCFQI
401: AKDSNEILNS WAGNLEKLLD LVEKSCHQIH KETMVHKAAL RP

Arabidopsis Description

EMB210726S proteasome regulatory subunit, putative (RPN5) [Source:UniProtKB/TrEMBL;Acc:B3H6B0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.