Factsheet for Bra028611.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85790	Canola	cytosol	100.0	100.0
Bra009074.1-P	Field mustard	cytosol	91.07	96.68
Bra006038.1-P	Field mustard	cytosol	90.62	96.21
Bra026640.1-P	Field mustard	cytosol	64.29	92.31
KRH59502	Soybean	cytosol	81.7	82.99
GSMUA_Achr2P16950_001	Banana	cytosol	77.23	81.99
Solyc04g012040.2.1	Tomato	cytosol	80.58	81.67
PGSC0003DMT400060796	Potato	cytosol	80.58	81.67
VIT_07s0031g01970.t01	Wine grape	cytosol	81.47	81.66
Solyc04g051370.2.1	Tomato	nucleus	80.36	81.45
GSMUA_Achr4P23680_001	Banana	cytosol	76.12	80.81
Os03t0851300-01	Rice	cytosol	78.79	79.68
KRH64121	Soybean	cytosol	78.12	79.01
EER90506	Sorghum	cytosol	77.68	78.56
EES07793	Sorghum	cytosol	77.46	78.33
TraesCS4A01G329600.1	Wheat	cytosol	77.01	77.88
TraesCS5D01G543600.1	Wheat	golgi, unclear	76.79	77.83
KRH53822	Soybean	cytosol	77.23	77.75
TraesCS5B01G544500.1	Wheat	cytosol	76.56	77.43
Zm00001d012844_P002	Maize	plasma membrane	76.34	77.2
Zm00001d009068_P002	Maize	extracellular	34.82	76.85
PGSC0003DMT400050736	Potato	cytosol	80.36	76.43
Zm00001d018523_P003	Maize	extracellular	75.22	76.07
KRH43368	Soybean	vacuole	81.03	75.62
AT5G09900.3	Thale cress	nucleus	76.12	73.81
KRH43942	Soybean	cytosol, mitochondrion, nucleus	23.44	69.08
VIT_12s0035g00780.t01	Wine grape	cytosol	11.83	57.61
VIT_08s0058g00020.t01	Wine grape	cytosol	9.38	51.22
HORVU5Hr1G035770.1	Barley	cytosol	4.91	39.29
OQU77597	Sorghum	plastid	8.48	37.62
OQU81472	Sorghum	extracellular	4.91	30.56

Protein Annotations

EnsemblPlants:Bra028611.1	EnsemblPlants:Bra028611.1-P	EnsemblPlantsGene:Bra028611	Gene3D:1.10.10.10	InterPro:IPR000717	InterPro:IPR036388
InterPro:PCI_dom	InterPro:PSMD12	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	PANTHER:PTHR10855	PANTHER:PTHR10855:SF1
PFAM:PF01399	PFscan:PS50250	SEG:seg	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785
UniParc:UPI0002543546	UniProt:M4EIJ6	MapMan:19.2.6.2.2.4	:	:	:

Description

AT5G09900 (E=2e-231) EMB2107, RPN5A, MSA | EMB2107 (EMBRYO DEFECTIVE 2107)

Coordinates

chrA02:+:1285494..1288584

Molecular Weight (calculated)

51571.8 Da

IEP (calculated)

7.780

GRAVY (calculated)

-0.360

Length

448 amino acids

Sequence
(BLAST)

001: MKNGKYVGDS GNLEASIDRL LNEEKQMRLA ENVSGTRKAA TEILQLCFEA KDWKLLNEQI LNLSKKRGQL KQAVQSMVQQ AMQYIDQTPD IETRIELIKT
101: LNNVSAGKIY VEIERARLTR KLAKIKEDQG QIAEAADLMQ EVAVETFGAM AKTEKIAFIL EQVRLCLDRQ DYVRAQILSR KINPRVFDAD TKKDKKKPKE
201: GENIVEEAPA DIPSLLELKR IYYELMIRYY SHNNEYLEIC RSYKAIYDIP SVKETPEQWI PVLRKICWFL VLAPHDPMQS SLLNATLEDK NLSEIPDFKM
301: LLKQVVTMEV IQWTSLWNKY KDEFEKEKSM VGGSLGDKAG EDLKLRIIEH NILVVSKYYS RITLKRLAEL LCLSIEEAEK HLSEMVVSKA LIAKIDRPSG
401: IVCFQVSKDS NEILNSWAVN LEKLLDLVEK SCHQIHKETM VHKAALRP

Best Arabidopsis Sequence Match ( AT5G09900.1 )
(BLAST)

001: MGDSGKLEAT IDRLLNEEKQ MRLAENVAGT RKAATEILQL CFDAKDWKLL NEQILNLSKK RGQLKQAVQS MVQQAMQYID QTPDIETRIE LIKTLNNVSA
101: GKIYVEIERA RLTKKLAKIK EEQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDFVRAQ ILSRKINPRV FDADTKKDKK KPKEGDNMVE
201: EAPADIPTLL ELKRIYYELM IRYYSHNNEY IEICRSYKAI YDIPSVKETP EQWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV
301: TMEVIQWTSL WNKYKDEFEK EKSMIGGSLG DKAGEDLKLR IIEHNILVVS KYYARITLKR LAELLCLSME EAEKHLSEMV VSKALIAKID RPSGIVCFQI
401: AKDSNEILNS WAGNLEKLLD LVEKSCHQIH KETMVHKAAL RP

Arabidopsis Description

EMB210726S proteasome regulatory subunit, putative (RPN5) [Source:UniProtKB/TrEMBL;Acc:B3H6B0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.