Factsheet for Solyc04g012040.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060796	Potato	cytosol	97.51	97.51
Solyc04g051370.2.1	Tomato	nucleus	91.18	91.18
KRH59502	Soybean	cytosol	84.39	84.58
VIT_07s0031g01970.t01	Wine grape	cytosol	85.52	84.56
CDY40066	Canola	cytosol	79.64	83.41
CDY56539	Canola	cytosol, nucleus	71.72	82.98
CDX81147	Canola	cytosol	79.19	82.94
GSMUA_Achr4P23680_001	Banana	cytosol	79.19	82.94
GSMUA_Achr2P16950_001	Banana	cytosol	79.19	82.94
Bra006038.1-P	Field mustard	cytosol	78.73	82.46
KRH64121	Soybean	cytosol	82.58	82.39
CDY21613	Canola	cytosol	78.51	82.23
CDX69878	Canola	cytosol	78.28	81.99
Bra009074.1-P	Field mustard	cytosol	78.05	81.75
Os03t0851300-01	Rice	cytosol	81.22	81.04
AT5G64760.1	Thale cress	cytosol	80.77	80.77
CDX85790	Canola	cytosol	81.67	80.58
Bra028611.1-P	Field mustard	cytosol	81.67	80.58
KRH53822	Soybean	cytosol	81.0	80.45
EER90506	Sorghum	cytosol	79.41	79.23
TraesCS5D01G543600.1	Wheat	golgi, unclear	78.96	78.96
TraesCS4A01G329600.1	Wheat	cytosol	78.51	78.33
TraesCS5B01G544500.1	Wheat	cytosol	78.05	77.88
Zm00001d012844_P002	Maize	plasma membrane	78.05	77.88
EES07793	Sorghum	cytosol	77.83	77.65
KRH43368	Soybean	vacuole	84.16	77.5
Zm00001d018523_P003	Maize	extracellular	76.92	76.75
Bra026640.1-P	Field mustard	cytosol	53.39	75.64
Zm00001d009068_P002	Maize	extracellular	33.71	73.4
KRH43942	Soybean	cytosol, mitochondrion, nucleus	23.76	69.08
VIT_12s0035g00780.t01	Wine grape	cytosol	14.25	68.48
AT5G09900.3	Thale cress	nucleus	63.8	61.04
VIT_08s0058g00020.t01	Wine grape	cytosol	10.86	58.54
CDY14507	Canola	cytosol	9.5	58.33
HORVU5Hr1G035770.1	Barley	cytosol	5.88	46.43
OQU77597	Sorghum	plastid	9.28	40.59
OQU81472	Sorghum	extracellular	5.66	34.72

Protein Annotations

Gene3D:1.10.10.10	MapMan:19.2.6.2.2.4	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0008541	GO:GO:0009056	GO:GO:0009987
GO:GO:0019538	GO:GO:0031595	GO:GO:0043161	InterPro:IPR000717	InterPro:IPR036388	UniProt:K4BPQ6
InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250	InterPro:PSMD12	PANTHER:PTHR10855	PANTHER:PTHR10855:SF1
SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	EnsemblPlantsGene:Solyc04g012040.2	EnsemblPlants:Solyc04g012040.2.1	UniParc:UPI00027661FA
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:+:4367412..4375553

Molecular Weight (calculated)

50751.1 Da

IEP (calculated)

7.469

GRAVY (calculated)

-0.236

Length

442 amino acids

Sequence
(BLAST)

001: MEGDRNLESK IEMLLNVEKQ MRQAGDVAGT RKSAIDILQL CFEARAWTTL NEQIVLLSKR RGQLKQAVQA MVQQAMQYID QTPDLETKIE LIKTLNNVSA
101: GKIYVEIERA RLIKKLAKIK EEQGLIAEAA NLMQEVAVET FGAMAKTEKI AFILEQVRLC LDSLDYVRAQ ILSRKINPKV FEADPSKEKK KPKEGDNVVE
201: EPAPDIPSLL ELKQIYYELM IRYYFQNNDY LEICRCYKAI YEIPSVKENP AQWIPVLRKI CWYLVLSPHD PMQSSLHNLT LEDKNLSGIP HFRLLLKQLI
301: TMEVIQWTSL WNTFKDEFEN EKNMLGGPLG DKAAEDLRLR VIEHNILVVS KYYSRITLKR LADLLCLSIQ EAEKHLSEMV VSKALVAKID RPVGIVCFQS
401: AKDSNDILNS WASNLEKLLD LVEKSCHQIH KETMVHKAAI RA

Best Arabidopsis Sequence Match ( AT5G09900.2 )
(BLAST)

001: MANSGKLEAT IDRLLNEEKQ MRLAENVAGT RKAATEILQL CFDAKDWKLL NEQILNLSKK RGQLKQAVQS MVQQAMQYID QTPDIETRIE LIKTLNNVSA
101: GKIYVEIERA RLTKKLAKIK EEQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDFVRAQ ILSRKINPRV FDADTKKDKK KPKEGDNMVE
201: EAPADIPTLL ELKRIYYELM IRYYSHNNEY IEICRSYKAI YDIPSVKETP EQWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV
301: TMEVIQWTSL WNKYKDEFEK EKSMIGGSLG DKAGEDLKLR IIEHNILVVS KYYARITLKR LAELLCLSME EAEKHLSEMV VSKALIAKID RPSGIVCFQI
401: AKDSNEILNS WAGNLEKLLD LVEKSCHQIH KETMVHKAAL RP

Arabidopsis Description

EMB210726S proteasome regulatory subunit, putative (RPN5) [Source:UniProtKB/TrEMBL;Acc:B3H6B0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.