CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX81147	Canola	cytosol	97.87	97.87
CDY21613	Canola	cytosol	97.39	97.39
CDX69878	Canola	cytosol	97.16	97.16
CDY56539	Canola	cytosol, nucleus	86.49	95.55
CDX85790	Canola	cytosol	99.76	93.97
GSMUA_Achr2P16950_001	Banana	cytosol	82.23	82.23
GSMUA_Achr4P23680_001	Banana	cytosol	81.04	81.04
KRH59502	Soybean	cytosol	84.36	80.73
Solyc04g012040.2.1	Tomato	cytosol	83.41	79.64
PGSC0003DMT400060796	Potato	cytosol	83.18	79.41
Solyc04g051370.2.1	Tomato	nucleus	82.94	79.19
VIT_07s0031g01970.t01	Wine grape	cytosol	83.65	78.97
Os03t0851300-01	Rice	cytosol	81.04	77.2
Zm00001d009068_P002	Maize	extracellular	36.97	76.85
KRH64121	Soybean	cytosol	80.33	76.52
KRH53822	Soybean	cytosol	80.09	75.96
EER90506	Sorghum	cytosol	79.62	75.85
TraesCS5D01G543600.1	Wheat	golgi, unclear	79.38	75.79
TraesCS4A01G329600.1	Wheat	cytosol	79.38	75.62
EES07793	Sorghum	cytosol	79.38	75.62
TraesCS5B01G544500.1	Wheat	cytosol	79.15	75.39
PGSC0003DMT400050736	Potato	cytosol	83.18	74.52
Zm00001d012844_P002	Maize	plasma membrane	78.2	74.49
Zm00001d018523_P003	Maize	extracellular	77.25	73.59
KRH43368	Soybean	vacuole	83.65	73.54
AT5G09900.3	Thale cress	nucleus	77.01	70.35
KRH43942	Soybean	cytosol, mitochondrion, nucleus	24.88	69.08
CDY14507	Canola	cytosol	11.14	65.28
VIT_12s0035g00780.t01	Wine grape	cytosol	10.43	47.83
HORVU5Hr1G035770.1	Barley	cytosol	5.21	39.29
VIT_08s0058g00020.t01	Wine grape	cytosol	7.58	39.02
OQU77597	Sorghum	plastid	9.0	37.62
OQU81472	Sorghum	extracellular	5.21	30.56

Protein Annotations

Gene3D:1.10.10.10	MapMan:19.2.6.2.2.4	UniProt:A0A078HQZ2	EnsemblPlants:CDY40066	ProteinID:CDY40066	ProteinID:CDY40066.1
EnsemblPlantsGene:GSBRNA2T00068973001	InterPro:IPR000717	InterPro:IPR036388	InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250
InterPro:PSMD12	PANTHER:PTHR10855	PANTHER:PTHR10855:SF1	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785
UniParc:UPI0004EEF990	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

BnaC02g00640DBnaC02g00640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HQZ2]

Coordinates

chrLK032463:-:48879..51551

Molecular Weight (calculated)

48664.5 Da

IEP (calculated)

8.039

GRAVY (calculated)

-0.310

Length

422 amino acids

Sequence
(BLAST)

001: MRLAENVAGT RKAATEILQL CFEAKDWKLL NEQILNLSKK RGQLKQAVQS MVQQAMQYID QTPDIETRIE LIKTLNNVSA GKIYVEIERA RLTRKLAKIK
101: EDQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDYVRAQ ILSRKINPRV FDADTKKDKK KPKEGENIVE EAPADIPSLL ELKRIYYELM
201: IRYYSHNNEY LEICRSYKAI YDIPSVKETP EQWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV TMEVIQWTSL WNKYKDEFEK
301: EKSMVGGSLG DKAGEDLKLR IIEHNILVVS KYYSRITLKR LAELLCLSIE EAEKHLSEMV VSKALIAKID RPSGIVCFQV SKDSNEILNS WAVNLEKLLD
401: LVEKSCHQIH KETMVHKAAL RP

Best Arabidopsis Sequence Match ( AT5G09900.1 )
(BLAST)

001: MGDSGKLEAT IDRLLNEEKQ MRLAENVAGT RKAATEILQL CFDAKDWKLL NEQILNLSKK RGQLKQAVQS MVQQAMQYID QTPDIETRIE LIKTLNNVSA
101: GKIYVEIERA RLTKKLAKIK EEQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDFVRAQ ILSRKINPRV FDADTKKDKK KPKEGDNMVE
201: EAPADIPTLL ELKRIYYELM IRYYSHNNEY IEICRSYKAI YDIPSVKETP EQWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV
301: TMEVIQWTSL WNKYKDEFEK EKSMIGGSLG DKAGEDLKLR IIEHNILVVS KYYARITLKR LAELLCLSME EAEKHLSEMV VSKALIAKID RPSGIVCFQI
401: AKDSNEILNS WAGNLEKLLD LVEKSCHQIH KETMVHKAAL RP

Arabidopsis Description

EMB210726S proteasome regulatory subunit, putative (RPN5) [Source:UniProtKB/TrEMBL;Acc:B3H6B0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.