Factsheet for TraesCS5B01G544500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G329600.1	Wheat	cytosol	99.32	99.32
TraesCS5D01G543600.1	Wheat	golgi, unclear	98.42	98.64
HORVU5Hr1G122560.2	Barley	cytosol, nucleus	97.07	93.07
Os03t0851300-01	Rice	cytosol	90.97	90.97
HORVU5Hr1G122430.1	Barley	plastid	97.74	89.46
EER90506	Sorghum	cytosol	88.49	88.49
EES07793	Sorghum	cytosol	87.81	87.81
Zm00001d012844_P002	Maize	plasma membrane	87.58	87.58
Zm00001d018523_P003	Maize	extracellular	85.78	85.78
GSMUA_Achr2P16950_001	Banana	cytosol	80.59	84.6
GSMUA_Achr4P23680_001	Banana	cytosol	79.01	82.94
HORVU1Hr1G003160.1	Barley	cytosol, nucleus, plastid	36.57	82.65
KRH59502	Soybean	cytosol	82.17	82.54
Zm00001d009068_P002	Maize	extracellular	37.7	82.27
CDY56539	Canola	cytosol, nucleus	69.3	80.37
CDX81147	Canola	cytosol	76.07	79.86
VIT_07s0031g01970.t01	Wine grape	cytosol	80.36	79.64
CDX69878	Canola	cytosol	75.62	79.38
CDY21613	Canola	cytosol	75.39	79.15
Bra009074.1-P	Field mustard	cytosol	75.39	79.15
CDY40066	Canola	cytosol	75.39	79.15
KRH64121	Soybean	cytosol	78.78	78.78
Bra006038.1-P	Field mustard	cytosol	74.94	78.67
PGSC0003DMT400060796	Potato	cytosol	78.1	78.28
Solyc04g051370.2.1	Tomato	nucleus	78.1	78.28
Solyc04g012040.2.1	Tomato	cytosol	77.88	78.05
KRH53822	Soybean	cytosol	78.33	77.98
Bra028611.1-P	Field mustard	cytosol	77.43	76.56
CDX85790	Canola	cytosol	77.43	76.56
KRH43368	Soybean	vacuole	81.72	75.42
AT5G64760.1	Thale cress	cytosol	75.17	75.34
Bra026640.1-P	Field mustard	cytosol	51.92	73.72
PGSC0003DMT400050736	Potato	cytosol	77.65	73.04
KRH43942	Soybean	cytosol, mitochondrion, nucleus	23.7	69.08
AT5G09900.3	Thale cress	nucleus	61.85	59.31
VIT_12s0035g00780.t01	Wine grape	cytosol	11.74	56.52
CDY14507	Canola	cytosol	9.03	55.56
VIT_08s0058g00020.t01	Wine grape	cytosol	9.48	51.22

Protein Annotations

EnsemblPlants:TraesCS5B01G544500.1	EnsemblPlantsGene:TraesCS5B01G544500	Gene3D:1.10.10.10	InterPro:IPR000717	InterPro:IPR036388	InterPro:PCI_dom
InterPro:PSMD12	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	PANTHER:PTHR10855	PANTHER:PTHR10855:SF1	PFAM:PF01399
PFscan:PS50250	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	MapMan:19.2.6.2.2.4	:

Description

No Description!

Coordinates

chr5B:+:697113917..697118140

Molecular Weight (calculated)

50446.5 Da

IEP (calculated)

7.984

GRAVY (calculated)

-0.216

Length

443 amino acids

Sequence
(BLAST)

001: MEGSGSSLDA AIESLLNTEK QCRLAGDVAG TRKAAVDIVE LCFKDAAWKT LNDQIVVLSK RRGQLKQAIT AVVQKAMEYI DVTPDVETRI ELIKTLSSVA
101: AGKIYVEIER ARLIKRLAKI KEEQGKIDEA AEIMQEVAVE TFGSMAKTEK LAFILEQVRL CLDRQDYVRA QILSRKISPR VFDADTSKDK KKPKDGDNMV
201: QEAPADVPSL LELKRIYYEL MIRYYSHNND YLEICRCYKS IYEIPSIKED PAKWTPILRK ICWFLVLAPH DPMQSSLLNA TLEDKNLSEI PNFRLLLKQV
301: VTMEVIQWTK LWEFFKDEYE NEKNLLGGAL GTKAAEDLKL RIIEHNILVV SKYYSRITLK RLADLLCLSL QEAEKHISDM VNSKALIAKI DRPMGIVSFR
401: TAQDSNGVLN SWASNLEKLL DLVEKSCHQI HKETMIHKAV LKA

Best Arabidopsis Sequence Match ( AT5G09900.1 )
(BLAST)

001: MGDSGKLEAT IDRLLNEEKQ MRLAENVAGT RKAATEILQL CFDAKDWKLL NEQILNLSKK RGQLKQAVQS MVQQAMQYID QTPDIETRIE LIKTLNNVSA
101: GKIYVEIERA RLTKKLAKIK EEQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDFVRAQ ILSRKINPRV FDADTKKDKK KPKEGDNMVE
201: EAPADIPTLL ELKRIYYELM IRYYSHNNEY IEICRSYKAI YDIPSVKETP EQWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV
301: TMEVIQWTSL WNKYKDEFEK EKSMIGGSLG DKAGEDLKLR IIEHNILVVS KYYARITLKR LAELLCLSME EAEKHLSEMV VSKALIAKID RPSGIVCFQI
401: AKDSNEILNS WAGNLEKLLD LVEKSCHQIH KETMVHKAAL RP

Arabidopsis Description

EMB210726S proteasome regulatory subunit, putative (RPN5) [Source:UniProtKB/TrEMBL;Acc:B3H6B0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.