Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026640.1-P | Field mustard | cytosol | 60.61 | 89.74 |
| CDY40066 | Canola | cytosol | 70.35 | 77.01 |
| CDX81147 | Canola | cytosol | 69.91 | 76.54 |
| Bra028611.1-P | Field mustard | cytosol | 73.81 | 76.12 |
| CDX85790 | Canola | cytosol | 73.81 | 76.12 |
| Bra006038.1-P | Field mustard | cytosol | 69.48 | 76.07 |
| CDY21613 | Canola | cytosol | 69.48 | 76.07 |
| CDX69878 | Canola | cytosol | 69.26 | 75.83 |
| Bra009074.1-P | Field mustard | cytosol | 69.05 | 75.59 |
| AT5G64760.1 | Thale cress | cytosol | 71.64 | 74.89 |
| CDY56539 | Canola | cytosol, nucleus | 60.61 | 73.3 |
| KRH43942 | Soybean | cytosol, mitochondrion, nucleus | 22.51 | 68.42 |
| KRH59502 | Soybean | cytosol | 62.77 | 65.76 |
| Solyc04g051370.2.1 | Tomato | nucleus | 61.26 | 64.03 |
| VIT_07s0031g01970.t01 | Wine grape | cytosol | 61.9 | 63.98 |
| GSMUA_Achr4P23680_001 | Banana | cytosol | 58.44 | 63.98 |
| PGSC0003DMT400060796 | Potato | cytosol | 61.04 | 63.8 |
| Solyc04g012040.2.1 | Tomato | cytosol | 61.04 | 63.8 |
| GSMUA_Achr2P16950_001 | Banana | cytosol | 58.23 | 63.74 |
| Os03t0851300-01 | Rice | cytosol | 60.61 | 63.21 |
| KRH64121 | Soybean | cytosol | 60.39 | 62.98 |
| EES07793 | Sorghum | cytosol | 60.17 | 62.75 |
| TraesCS5D01G543600.1 | Wheat | golgi, unclear | 59.74 | 62.44 |
| TraesCS4A01G329600.1 | Wheat | cytosol | 59.74 | 62.3 |
| Zm00001d018523_P003 | Maize | extracellular | 59.74 | 62.3 |
| Zm00001d012844_P002 | Maize | plasma membrane | 59.52 | 62.08 |
| TraesCS5B01G544500.1 | Wheat | cytosol | 59.31 | 61.85 |
| KRH53822 | Soybean | cytosol | 59.52 | 61.8 |
| EER90506 | Sorghum | cytosol | 59.09 | 61.63 |
| Zm00001d009068_P002 | Maize | extracellular | 26.62 | 60.59 |
| PGSC0003DMT400050736 | Potato | cytosol | 61.47 | 60.3 |
| KRH43368 | Soybean | vacuole | 62.55 | 60.21 |
| VIT_12s0035g00780.t01 | Wine grape | cytosol | 11.04 | 55.43 |
| VIT_08s0058g00020.t01 | Wine grape | cytosol | 8.66 | 48.78 |
| HORVU5Hr1G035770.1 | Barley | cytosol | 4.33 | 35.71 |
| OQU77597 | Sorghum | plastid | 7.58 | 34.65 |
| OQU81472 | Sorghum | extracellular | 4.33 | 27.78 |
Protein Annotations
| MapMan:19.2.6.2.2.4 | EntrezGene:830850 | ProteinID:AED91465.1 | ArrayExpress:AT5G09900 | EnsemblPlantsGene:AT5G09900 | RefSeq:AT5G09900 |
| TAIR:AT5G09900 | RefSeq:AT5G09900-TAIR-G | EnsemblPlants:AT5G09900.3 | TAIR:AT5G09900.3 | Unigene:At.20339 | UniProt:B3H6B0 |
| ncoils:Coil | Symbol:EMB2107 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0009506 | RefSeq:NP_001119202.1 | PO:PO:0000003 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | InterPro:PSMD12 | PANTHER:PTHR10855 | PANTHER:PTHR10855:SF1 |
| UniParc:UPI00017394BA | SEG:seg | : | : | : | : |
Description
EMB210726S proteasome regulatory subunit, putative (RPN5) [Source:UniProtKB/TrEMBL;Acc:B3H6B0]
Coordinates
chr5:-:3089278..3092595
Molecular Weight (calculated)
52670.6 Da
IEP (calculated)
8.379
GRAVY (calculated)
-0.560
Length
462 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDSGKLEAT IDRLLNEEKQ MRLAENVAGT RKAATEILQL CFDAKDWKLL NEQILNLSKK RGQLKQAVQS MVQQAMQYID QTPDIETRIE LIKTLNNVSA
101: GKIYVEIERA RLTKKLAKIK EEQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDFVRAQ ILSRKINPRV FDADTKKDKK KPKEGDNMVE
201: EAPADIPTLL ELKRIYYELM IRYYSHNNEY IEICRSYKAI YDIPSVKETP EQWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV
301: TMEVIQWTSL WNKYKDEFEK EKSMIGGSLG DKAGEDLKLR IIEHVKYPRC LKVLRKDNLK ETCRAFMPEH GGGGEASIGD GSVKSTDCKN RQTIWNCVLP
401: DRKGQQRDSK LVGREFGEAS RSCGKELPPN SQGNHGSQSR SQTLKTCGLL HENFSGSSSL SY
101: GKIYVEIERA RLTKKLAKIK EEQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDFVRAQ ILSRKINPRV FDADTKKDKK KPKEGDNMVE
201: EAPADIPTLL ELKRIYYELM IRYYSHNNEY IEICRSYKAI YDIPSVKETP EQWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV
301: TMEVIQWTSL WNKYKDEFEK EKSMIGGSLG DKAGEDLKLR IIEHVKYPRC LKVLRKDNLK ETCRAFMPEH GGGGEASIGD GSVKSTDCKN RQTIWNCVLP
401: DRKGQQRDSK LVGREFGEAS RSCGKELPPN SQGNHGSQSR SQTLKTCGLL HENFSGSSSL SY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.