CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006038.1-P	Field mustard	cytosol	97.91	88.63
CDX81147	Canola	cytosol	96.86	87.68
CDX69878	Canola	cytosol	95.55	86.49
CDY40066	Canola	cytosol	95.55	86.49
CDY21613	Canola	cytosol	95.29	86.26
CDX85790	Canola	cytosol	95.55	81.47
Zm00001d009068_P002	Maize	extracellular	40.58	76.35
GSMUA_Achr2P16950_001	Banana	cytosol	82.98	75.12
GSMUA_Achr4P23680_001	Banana	cytosol	81.94	74.17
KRH59502	Soybean	cytosol	83.51	72.34
VIT_07s0031g01970.t01	Wine grape	cytosol	84.03	71.81
Solyc04g012040.2.1	Tomato	cytosol	82.98	71.72
PGSC0003DMT400060796	Potato	cytosol	82.72	71.49
Solyc04g051370.2.1	Tomato	nucleus	82.46	71.27
Os03t0851300-01	Rice	cytosol	82.2	70.88
EER90506	Sorghum	cytosol	81.15	69.98
TraesCS5D01G543600.1	Wheat	golgi, unclear	80.63	69.68
EES07793	Sorghum	cytosol	80.63	69.53
TraesCS4A01G329600.1	Wheat	cytosol	80.63	69.53
KRH64121	Soybean	cytosol	80.37	69.3
TraesCS5B01G544500.1	Wheat	cytosol	80.37	69.3
KRH43942	Soybean	cytosol, mitochondrion, nucleus	27.49	69.08
Zm00001d012844_P002	Maize	plasma membrane	79.58	68.62
KRH53822	Soybean	cytosol	79.84	68.54
Zm00001d018523_P003	Maize	extracellular	78.27	67.49
PGSC0003DMT400050736	Potato	cytosol	82.46	66.88
KRH43368	Soybean	vacuole	82.72	65.83
CDY14507	Canola	cytosol	12.3	65.28
AT5G09900.3	Thale cress	nucleus	73.3	60.61
HORVU5Hr1G035770.1	Barley	cytosol	6.02	41.07
OQU77597	Sorghum	plastid	9.95	37.62
OQU81472	Sorghum	extracellular	5.76	30.56
VIT_12s0035g00780.t01	Wine grape	cytosol	5.5	22.83
VIT_08s0058g00020.t01	Wine grape	cytosol	1.57	7.32

Protein Annotations

Gene3D:1.10.10.10	MapMan:19.2.6.2.2.4	UniProt:A0A078J2U9	EnsemblPlants:CDY56539	ProteinID:CDY56539	ProteinID:CDY56539.1
EnsemblPlantsGene:GSBRNA2T00019719001	InterPro:IPR000717	InterPro:IPR036388	InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250
InterPro:PSMD12	PANTHER:PTHR10855	PANTHER:PTHR10855:SF1	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785
UniParc:UPI0004EF0182	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

BnaA03g55850DBnaA03g55850D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078J2U9]

Coordinates

chrLK033498:+:382..2450

Molecular Weight (calculated)

44216.9 Da

IEP (calculated)

6.529

GRAVY (calculated)

-0.249

Length

382 amino acids

Sequence
(BLAST)

001: EYFCLQAVQS MVQQAMQYID QTPDIETKIE LIKTLNNVSA GKIYVEIERA RLTRRLAKIK EEQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC
101: LDRQDYVRAQ ILSRKINPRV FDADTKKDKK KPKEGENIVE EAPADIPSLL ELKRIYYELM IRYYSHNNEY LEICRSYKAI YDIPSVKETP EQWIPVLRKI
201: CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV TMEVIQWTAL WNKYKDEFEK EKSLIGGSLG DKAGEDLKLR IIEHNILVVS KYYSRITLRR
301: LAELLCLSIE EAEKYLSEMV VSKALIAKID RPSGVVCFQI AKDSNEILNS WAVNLEKLLD LVEKSCHQIH KETMVHKAVL RS

Best Arabidopsis Sequence Match ( AT5G09900.1 )
(BLAST)

001: MGDSGKLEAT IDRLLNEEKQ MRLAENVAGT RKAATEILQL CFDAKDWKLL NEQILNLSKK RGQLKQAVQS MVQQAMQYID QTPDIETRIE LIKTLNNVSA
101: GKIYVEIERA RLTKKLAKIK EEQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDFVRAQ ILSRKINPRV FDADTKKDKK KPKEGDNMVE
201: EAPADIPTLL ELKRIYYELM IRYYSHNNEY IEICRSYKAI YDIPSVKETP EQWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV
301: TMEVIQWTSL WNKYKDEFEK EKSMIGGSLG DKAGEDLKLR IIEHNILVVS KYYARITLKR LAELLCLSME EAEKHLSEMV VSKALIAKID RPSGIVCFQI
401: AKDSNEILNS WAGNLEKLLD LVEKSCHQIH KETMVHKAAL RP

Arabidopsis Description

EMB210726S proteasome regulatory subunit, putative (RPN5) [Source:UniProtKB/TrEMBL;Acc:B3H6B0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.