Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P16950_001 | Banana | cytosol | 90.76 | 90.76 |
| VIT_07s0031g01970.t01 | Wine grape | cytosol | 87.68 | 82.77 |
| CDY56539 | Canola | cytosol, nucleus | 74.17 | 81.94 |
| KRH59502 | Soybean | cytosol | 85.31 | 81.63 |
| CDX81147 | Canola | cytosol | 81.04 | 81.04 |
| CDY40066 | Canola | cytosol | 81.04 | 81.04 |
| CDY21613 | Canola | cytosol | 80.57 | 80.57 |
| Os03t0851300-01 | Rice | cytosol | 84.36 | 80.36 |
| Bra006038.1-P | Field mustard | cytosol | 80.33 | 80.33 |
| CDX69878 | Canola | cytosol | 80.33 | 80.33 |
| EER90506 | Sorghum | cytosol | 84.12 | 80.14 |
| Bra009074.1-P | Field mustard | cytosol | 80.09 | 80.09 |
| Zm00001d012844_P002 | Maize | plasma membrane | 83.41 | 79.46 |
| EES07793 | Sorghum | cytosol | 83.41 | 79.46 |
| TraesCS5D01G543600.1 | Wheat | golgi, unclear | 83.18 | 79.41 |
| TraesCS4A01G329600.1 | Wheat | cytosol | 83.18 | 79.23 |
| KRH64121 | Soybean | cytosol | 83.18 | 79.23 |
| PGSC0003DMT400060796 | Potato | cytosol | 82.94 | 79.19 |
| Solyc04g012040.2.1 | Tomato | cytosol | 82.94 | 79.19 |
| TraesCS5B01G544500.1 | Wheat | cytosol | 82.94 | 79.01 |
| KRH53822 | Soybean | cytosol | 82.7 | 78.43 |
| Solyc04g051370.2.1 | Tomato | nucleus | 81.99 | 78.28 |
| Zm00001d018523_P003 | Maize | extracellular | 81.28 | 77.43 |
| Zm00001d009068_P002 | Maize | extracellular | 36.73 | 76.35 |
| CDX85790 | Canola | cytosol | 80.81 | 76.12 |
| Bra028611.1-P | Field mustard | cytosol | 80.81 | 76.12 |
| HORVU5Hr1G122560.2 | Barley | cytosol, nucleus | 82.46 | 75.32 |
| AT5G64760.1 | Thale cress | cytosol | 78.67 | 75.11 |
| KRH43368 | Soybean | vacuole | 85.31 | 75.0 |
| PGSC0003DMT400050736 | Potato | cytosol | 81.99 | 73.46 |
| HORVU5Hr1G122430.1 | Barley | plastid | 82.7 | 72.11 |
| Bra026640.1-P | Field mustard | cytosol | 53.08 | 71.79 |
| KRH43942 | Soybean | cytosol, mitochondrion, nucleus | 25.83 | 71.71 |
| HORVU1Hr1G003160.1 | Barley | cytosol, nucleus, plastid | 31.52 | 67.86 |
| AT5G09900.3 | Thale cress | nucleus | 63.98 | 58.44 |
| CDY14507 | Canola | cytosol | 9.95 | 58.33 |
| VIT_12s0035g00780.t01 | Wine grape | cytosol | 11.85 | 54.35 |
| VIT_08s0058g00020.t01 | Wine grape | cytosol | 8.77 | 45.12 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:19.2.6.2.2.4 | EnsemblPlantsGene:GSMUA_Achr4G23680_001 | EnsemblPlants:GSMUA_Achr4P23680_001 | EnsemblPlants:GSMUA_Achr4T23680_001 | InterPro:IPR000717 |
| InterPro:IPR036388 | UniProt:M0SRH9 | InterPro:PCI_dom | PFAM:PF01399 | PFscan:PS50250 | InterPro:PSMD12 |
| PANTHER:PTHR10855 | PANTHER:PTHR10855:SF1 | SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 | UniParc:UPI000294FF86 |
| InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | : | : | : | : |
Description
Putative 26S proteasome non-ATPase regulatory subunit 12 [Source:GMGC_GENE;Acc:GSMUA_Achr4G23680_001]
Coordinates
chr4:+:23691586..23696715
Molecular Weight (calculated)
48176.9 Da
IEP (calculated)
7.868
GRAVY (calculated)
-0.169
Length
422 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLAGDVAGT KKAVIDIVEL CYKARAWKTL NDQIVLLSKR RGQLKQAVTA VVQKAMQYID DTPDIETRIE LIKTLNNVSA GKIYVEIERA RLIKKLAEIK
101: EEQGLISEAA DLMQEIAVET FGAMAKTEKI AFILDQVRLC LDRQDYVRAQ ILSRKISPRV FDADASKGKK KPKEGDNVVE EAPADIPSLL ELKRIYYELM
201: IRYHSHNNDY LEICRSYKAI YGIPSVKEDS AQWIPVLRKI CWYLVLSPHD PMQSSLLNST LEDKNLSELP SFHLLLKQLV TMEVIHWASL WEMYKVEFEN
301: EKNLLGGSLG TEAEEDLKLR IIEHNILVVS KYYSRITLKR LADLLCLSLQ EAEKHLSDMI VSKALVAKID RPIGIVSFQT AKGSNDMLNS WSMNLEKLLD
401: LVEKSCHQIH KETMVHKAVL RA
101: EEQGLISEAA DLMQEIAVET FGAMAKTEKI AFILDQVRLC LDRQDYVRAQ ILSRKISPRV FDADASKGKK KPKEGDNVVE EAPADIPSLL ELKRIYYELM
201: IRYHSHNNDY LEICRSYKAI YGIPSVKEDS AQWIPVLRKI CWYLVLSPHD PMQSSLLNST LEDKNLSELP SFHLLLKQLV TMEVIHWASL WEMYKVEFEN
301: EKNLLGGSLG TEAEEDLKLR IIEHNILVVS KYYSRITLKR LADLLCLSLQ EAEKHLSDMI VSKALVAKID RPIGIVSFQT AKGSNDMLNS WSMNLEKLLD
401: LVEKSCHQIH KETMVHKAVL RA
001: MANSGKLEAT IDRLLNEEKQ MRLAENVAGT RKAATEILQL CFDAKDWKLL NEQILNLSKK RGQLKQAVQS MVQQAMQYID QTPDIETRIE LIKTLNNVSA
101: GKIYVEIERA RLTKKLAKIK EEQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDFVRAQ ILSRKINPRV FDADTKKDKK KPKEGDNMVE
201: EAPADIPTLL ELKRIYYELM IRYYSHNNEY IEICRSYKAI YDIPSVKETP EQWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV
301: TMEVIQWTSL WNKYKDEFEK EKSMIGGSLG DKAGEDLKLR IIEHNILVVS KYYARITLKR LAELLCLSME EAEKHLSEMV VSKALIAKID RPSGIVCFQI
401: AKDSNEILNS WAGNLEKLLD LVEKSCHQIH KETMVHKAAL RP
101: GKIYVEIERA RLTKKLAKIK EEQGQIAEAA DLMQEVAVET FGAMAKTEKI AFILEQVRLC LDRQDFVRAQ ILSRKINPRV FDADTKKDKK KPKEGDNMVE
201: EAPADIPTLL ELKRIYYELM IRYYSHNNEY IEICRSYKAI YDIPSVKETP EQWIPVLRKI CWFLVLAPHD PMQSSLLNAT LEDKNLSEIP DFKMLLKQVV
301: TMEVIQWTSL WNKYKDEFEK EKSMIGGSLG DKAGEDLKLR IIEHNILVVS KYYARITLKR LAELLCLSME EAEKHLSEMV VSKALIAKID RPSGIVCFQI
401: AKDSNEILNS WAGNLEKLLD LVEKSCHQIH KETMVHKAAL RP
Arabidopsis Description
EMB210726S proteasome regulatory subunit, putative (RPN5) [Source:UniProtKB/TrEMBL;Acc:B3H6B0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.