Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G20140.1 | Thale cress | cytosol | 99.1 | 99.1 |
| CDY35245 | Canola | cytosol | 98.87 | 98.87 |
| Bra011079.1-P | Field mustard | cytosol | 98.87 | 98.87 |
| CDY06847 | Canola | cytosol | 98.65 | 98.65 |
| CDX92914 | Canola | cytosol, extracellular | 98.65 | 98.65 |
| CDY14224 | Canola | cytosol | 98.87 | 98.43 |
| CDX97472 | Canola | cytosol | 98.87 | 98.43 |
| Bra010342.1-P | Field mustard | cytosol | 98.87 | 98.43 |
| KRH32292 | Soybean | cytosol, nucleus | 97.07 | 97.07 |
| KRH19693 | Soybean | cytosol | 96.84 | 96.84 |
| KRH67524 | Soybean | nucleus | 97.07 | 96.41 |
| KRG95799 | Soybean | cytosol, nucleus | 96.84 | 96.19 |
| VIT_07s0005g05160.t01 | Wine grape | cytosol | 96.61 | 96.18 |
| PGSC0003DMT400040872 | Potato | cytosol | 95.94 | 95.72 |
| Solyc06g083620.2.1 | Tomato | nucleus, plastid | 95.26 | 95.05 |
| PGSC0003DMT400051744 | Potato | cytosol | 95.26 | 95.05 |
| GSMUA_Achr4P05850_001 | Banana | cytosol | 88.71 | 92.69 |
| GSMUA_Achr4P05840_001 | Banana | cytosol | 87.58 | 92.16 |
| EER99961 | Sorghum | cytosol | 92.78 | 91.95 |
| Os07t0691800-01 | Rice | cytosol, nucleus, plasma membrane, plastid | 92.78 | 91.74 |
| Zm00001d022573_P001 | Maize | cytosol, extracellular, plasma membrane | 92.55 | 91.72 |
| Os03t0298400-01 | Rice | plasma membrane | 92.78 | 91.33 |
| TraesCS2B01G105700.1 | Wheat | cytosol | 92.55 | 91.31 |
| TraesCS2D01G087900.1 | Wheat | cytosol, golgi | 92.55 | 91.31 |
| TraesCS2A01G090000.1 | Wheat | cytosol | 92.33 | 91.09 |
| HORVU4Hr1G055060.1 | Barley | cytosol | 92.33 | 90.89 |
| TraesCS4D01G190600.1 | Wheat | cytosol, golgi | 92.33 | 90.89 |
| TraesCS4A01G115000.1 | Wheat | cytosol | 92.1 | 90.67 |
| TraesCS4B01G189200.1 | Wheat | cytosol | 92.1 | 90.67 |
| Zm00001d028801_P001 | Maize | cytosol, extracellular | 90.97 | 90.36 |
| Zm00001d007215_P001 | Maize | cytosol | 92.55 | 88.36 |
| HORVU2Hr1G014770.2 | Barley | cytosol, plastid | 86.68 | 87.07 |
| CDY59958 | Canola | cytosol | 64.79 | 78.85 |
| Bra024165.1-P | Field mustard | cytosol | 57.11 | 78.33 |
| HORVU3Hr1G095530.3 | Barley | mitochondrion, plastid | 42.21 | 74.5 |
| HORVU1Hr1G091080.1 | Barley | mitochondrion, plastid | 41.99 | 74.1 |
| AT5G58290.1 | Thale cress | cytosol | 43.34 | 47.06 |
| AT1G09100.1 | Thale cress | cytosol | 41.08 | 43.03 |
| AT1G45000.1 | Thale cress | cytosol | 37.92 | 42.11 |
| AT3G05530.1 | Thale cress | cytosol | 40.18 | 41.98 |
| AT5G43010.1 | Thale cress | cytosol | 37.7 | 41.85 |
| AT5G20000.1 | Thale cress | cytosol | 38.83 | 41.05 |
| AT5G19990.1 | Thale cress | cytosol | 38.83 | 41.05 |
| AT1G53750.1 | Thale cress | cytosol | 37.25 | 38.73 |
| AT1G53780.2 | Thale cress | cytosol | 38.37 | 27.42 |
| AT2G03670.1 | Thale cress | cytosol | 26.64 | 19.57 |
| AT3G09840.1 | Thale cress | cytosol | 28.89 | 15.82 |
| AT5G03340.1 | Thale cress | cytosol | 28.67 | 15.68 |
| AT3G53230.1 | Thale cress | cytosol | 28.67 | 15.58 |
| AT1G03000.1 | Thale cress | mitochondrion | 29.57 | 13.92 |
| AT3G01610.2 | Thale cress | nucleus | 25.51 | 13.61 |
| AT3G56690.1 | Thale cress | cytosol, plastid | 28.22 | 12.23 |
| AT5G08470.1 | Thale cress | cytosol | 25.73 | 10.09 |
Protein Annotations
| Gene3D:1.10.8.60 | MapMan:19.2.6.2.1.2 | Gene3D:2.40.50.140 | InterPro:26S_Psome_P45-like | Gene3D:3.40.50.300 | EntrezGene:829025 |
| UniProt:A0A178V3V3 | InterPro:AAA+_ATPase | EMBL:AB161192 | ProteinID:AEE85578.1 | EMBL:AF123391 | EMBL:AL078469 |
| ArrayExpress:AT4G29040 | EnsemblPlantsGene:AT4G29040 | RefSeq:AT4G29040 | TAIR:AT4G29040 | RefSeq:AT4G29040-TAIR-G | EnsemblPlants:AT4G29040.1 |
| TAIR:AT4G29040.1 | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | EMBL:AY034975 | Unigene:At.24596 | ProteinID:CAB43918.1 |
| ProteinID:CAB79662.1 | GO:GO:0000003 | GO:GO:0000166 | GO:GO:0000502 | GO:GO:0002376 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006950 |
| GO:GO:0007275 | GO:GO:0007292 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009058 |
| GO:GO:0009408 | GO:GO:0009628 | GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009933 | GO:GO:0009965 |
| GO:GO:0009987 | GO:GO:0010015 | GO:GO:0010078 | GO:GO:0010311 | GO:GO:0016020 | GO:GO:0016043 |
| GO:GO:0016787 | GO:GO:0017025 | GO:GO:0019538 | GO:GO:0030163 | GO:GO:0030433 | GO:GO:0031595 |
| GO:GO:0031597 | GO:GO:0035266 | GO:GO:0036402 | GO:GO:0040007 | GO:GO:0043161 | GO:GO:0043248 |
| GO:GO:0045087 | GO:GO:0045899 | GO:GO:0046686 | GO:GO:0048232 | GO:GO:0048364 | GO:GO:0048367 |
| GO:GO:0048827 | GO:GO:0048829 | GO:GO:0051788 | GO:GO:0060968 | GO:GO:0090351 | GO:GO:1901800 |
| RefSeq:NP_194633.1 | ProteinID:OAO99732.1 | InterPro:P-loop_NTPase | PFAM:PF00004 | PO:PO:0000005 | PO:PO:0000013 |
| PO:PO:0000025 | PO:PO:0000037 | PO:PO:0000056 | PO:PO:0000059 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0006085 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0009108 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0020148 | PO:PO:0020149 | PO:PO:0025022 | PO:PO:0025279 |
| PO:PO:0025280 | PO:PO:0025281 | ScanProsite:PS00674 | PANTHER:PTHR23073 | PANTHER:PTHR23073:SF61 | UniProt:Q9SZD4 |
| Symbol:RPT2a | SMART:SM00382 | SUPFAM:SSF52540 | TIGRFAMs:TIGR01242 | UniParc:UPI000009FA4A | SEG:seg |
Description
RPT2ARPT2a [Source:UniProtKB/TrEMBL;Acc:A0A178V3V3]
Coordinates
chr4:+:14312283..14314600
Molecular Weight (calculated)
49372.8 Da
IEP (calculated)
6.077
GRAVY (calculated)
-0.458
Length
443 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQGPSGGLN RQGDRKPDGG DKKEKKFEPA APPARVGRKQ RKQKGPEAAA RLPTVTPSTK CKLRLLKLER IKDYLLMEEE FVANQERLKP QEEKAEEDRS
101: KVDDLRGTPM SVGNLEELID ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE KAPLESYADI GGLEAQIQEI
201: KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA
301: HSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD IKTRRRIFQI HTSKMTLSED VNLEEFVMTK DEFSGADIKA
401: ICTEAGLLAL RERRMKVTHP DFKKAKEKVM FKKKEGVPEG LYM
101: KVDDLRGTPM SVGNLEELID ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE KAPLESYADI GGLEAQIQEI
201: KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA
301: HSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD IKTRRRIFQI HTSKMTLSED VNLEEFVMTK DEFSGADIKA
401: ICTEAGLLAL RERRMKVTHP DFKKAKEKVM FKKKEGVPEG LYM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.