Factsheet for AT3G53230.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13308	Canola	cytosol	95.34	95.93
Bra003123.1-P	Field mustard	cytosol	95.21	95.8
Bra006978.1-P	Field mustard	cytosol	93.62	94.08
VIT_08s0040g01480.t01	Wine grape	cytosol	91.78	92.8
AT5G03340.1	Thale cress	cytosol	92.15	92.72
KRG96011	Soybean	endoplasmic reticulum, mitochondrion, nucleus	91.66	92.45
Zm00001d048409_P001	Maize	cytosol	90.8	92.04
KRH67721	Soybean	endoplasmic reticulum, nucleus	91.17	91.96
KRH19916	Soybean	endoplasmic reticulum, mitochondrion	91.41	91.86
AT3G09840.1	Thale cress	cytosol	91.17	91.84
GSMUA_Achr5P15500_001	Banana	cytosol, plasma membrane	91.04	91.72
Zm00001d027707_P001	Maize	cytosol, plasma membrane	90.8	91.7
KRH32530	Soybean	endoplasmic reticulum, mitochondrion	91.17	91.39
GSMUA_Achr4P26800_001	Banana	cytosol	90.06	90.73
Zm00001d014124_P001	Maize	cytosol, plasma membrane	90.06	90.51
Zm00001d032859_P006	Maize	plasma membrane	89.82	90.37
Os03t0151800-02	Rice	cytosol, extracellular, nucleus, plasma membrane, plastid	89.69	90.36
GSMUA_Achr9P23550_001	Banana	mitochondrion	86.14	87.1
TraesCSU01G001000.1	Wheat	cytosol	85.77	87.05
CDX67563	Canola	cytosol	93.13	86.35
Os10t0442600-01	Rice	cytosol, nucleus, plasma membrane, plastid	20.37	85.13
VIT_06s0061g00340.t01	Wine grape	cytosol	79.75	84.97
TraesCS3B01G154400.1	Wheat	cytosol	81.96	84.77
HORVU0Hr1G006340.1	Barley	cytosol	81.47	84.26
TraesCS3A01G144500.1	Wheat	cytosol	54.97	84.05
TraesCS3A01G145100.1	Wheat	cytosol	81.35	84.03
TraesCS3B01G172000.1	Wheat	cytosol	80.37	83.55
TraesCS1B01G419200.1	Wheat	cytosol	80.86	83.52
TraesCS3B01G171200.1	Wheat	cytosol	80.74	83.5
TraesCS3A01G145000.1	Wheat	cytosol	71.17	83.33
TraesCS1B01G259200.1	Wheat	cytosol	80.61	83.27
TraesCS3B01G172100.1	Wheat	cytosol	80.61	83.16
EER95525	Sorghum	cytosol	79.51	83.08
TraesCS3B01G171400.1	Wheat	cytosol	73.86	82.81
KXG40206	Sorghum	cytosol	79.39	82.74
HORVU3Hr1G029450.1	Barley	cytosol	81.47	82.18
HORVU3Hr1G029440.1	Barley	cytosol	81.47	81.57
TraesCS3B01G171300.1	Wheat	cytosol	72.15	80.66
TraesCS5B01G323100.1	Wheat	cytosol	57.3	80.38
TraesCS1A01G248500.1	Wheat	cytosol	58.53	79.9
Zm00001d032117_P001	Maize	cytosol	26.87	68.44
AT2G03670.1	Thale cress	cytosol	27.12	36.65
AT1G45000.1	Thale cress	cytosol	16.69	34.09
AT5G43010.1	Thale cress	cytosol	16.56	33.83
AT1G53750.1	Thale cress	cytosol	17.06	32.63
AT5G58290.1	Thale cress	cytosol	15.34	30.64
AT3G01610.2	Thale cress	nucleus	31.17	30.6
AT3G05530.1	Thale cress	cytosol	15.58	29.95
AT1G09100.1	Thale cress	cytosol	15.46	29.79
AT2G20140.1	Thale cress	cytosol	15.83	29.12
AT5G20000.1	Thale cress	cytosol	14.97	29.12
AT5G19990.1	Thale cress	cytosol	14.85	28.88
AT4G29040.1	Thale cress	cytosol	15.58	28.67
AT3G56690.1	Thale cress	cytosol, plastid	31.78	25.34
AT1G03000.1	Thale cress	mitochondrion	27.48	23.8
AT1G53780.2	Thale cress	cytosol	16.81	22.1
AT5G08470.1	Thale cress	cytosol	24.79	17.88

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	EntrezGene:824489
InterPro:AAA+_ATPase	InterPro:AAA_ATPase_CDC48	ProteinID:AEE79050.1	EMBL:AK228801	ArrayExpress:AT3G53230	EnsemblPlantsGene:AT3G53230
RefSeq:AT3G53230	TAIR:AT3G53230	RefSeq:AT3G53230-TAIR-G	EnsemblPlants:AT3G53230.1	TAIR:AT3G53230.1	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	ProteinID:CAB64226.1	InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom	InterPro:Cdc48_dom2
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005730
GO:GO:0005737	GO:GO:0005794	GO:GO:0005829	GO:GO:0005856	GO:GO:0005886	GO:GO:0006810
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009524	GO:GO:0009987
GO:GO:0015031	GO:GO:0016020	GO:GO:0016787	GO:GO:0019538	GO:GO:0045732	GO:GO:0046686
GO:GO:0051301	RefSeq:NP_190891.1	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359	PFAM:PF02933
PO:PO:0000005	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001017
PO:PO:0001054	PO:PO:0001078	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025195	PO:PO:0025281	ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF122	UniProt:Q9SCN8
SMART:SM00382	SMART:SM01072	SMART:SM01073	SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585
TIGRFAMs:TIGR01243	UniParc:UPI0000126C21	SEG:seg	:	:	:

Description

CDC48DCell division control protein 48 homolog D [Source:UniProtKB/Swiss-Prot;Acc:Q9SCN8]

Coordinates

chr3:+:19723350..19727128

Molecular Weight (calculated)

90345.5 Da

IEP (calculated)

4.784

GRAVY (calculated)

-0.388

Length

815 amino acids

Sequence
(BLAST)

001: MANQAESSDS KGTKKDFSTA ILEKKKAANR LVVDEAINDD NSVVSLHPDT MEKLQLFRGD TILIKGKKRK DTVCIALADE TCDEPKIRMN KVVRSNLRVR
101: LGDVISVHQC PDVKYGNRVH ILPLDDTIEG VSGNIFDAYL KPYFLEAYRP VRKGDLFLVR GGMRSIEFKV IETDPAEYCV VAPDTEIFCE GEPIKREDEE
201: RLDEVGYDDV GGVRKQMAQI RELVELPLRH PQLFKSIGVK PPKGILLYGP PGSGKTLIAR AVANETGAFF FCINGPEIMS KLAGESESNL RKAFEEAEKN
301: APSIIFIDEI DSIAPKREKT HGEVERRIVS QLLTLMDGLK SRAHVIVMGA TNRPNSIDPA LRRFGRFDRE IDIGVPDEIG RLEVLRIHTK NMKLAEDVDL
401: ERVSKDTHGY VGADLAALCT EAALQCIREK MDVIDLDDEE IDAEILNSMA VSNDHFQTAL GNSNPSALRE TVVEVPNVSW EDIGGLENVK RELQETVQYP
501: VEHPEKFEKF GMSPSKGVLF YGPPGCGKTL LAKAIANECQ ANFISIKGPE LLTMWFGESE ANVREIFDKA RQSAPCVLFF DELDSIATQR GNSVGDAGGA
601: ADRVLNQLLT EMDGMNAKKT VFIIGATNRP DIIDPALLRP GRLDQLIYIP LPDEESRYQI FKSCLRKSPV AKDVDLRALA KYTQGFSGAD ITEICQRSCK
701: YAIRENIEKD IEKERKRAES PEAMEEDEEE IAEIKAGHFE ESMKYARRSV SDADIRKYQA FAQTLQQSRG FGSEFRFPDA PTGTTGAFPG AAATVGGVDP
801: FATSGGAADD DDLYS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.