Factsheet for Zm00001d027707_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 23353019

msms PMID: 23353019 doi

D Hopff, S Wienkoop, S Lüthje

University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014124_P001
Zm00001d016928_P010
Zm00001d024430_P002
Zm00001d025580_P001
Zm00001d027707_P001
Zm00001d032117_P001
Zm00001d032859_P006
Zm00001d048409_P001
Zm00001d049480_P005
Zm00001d050868_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09840.1	Zm00001d016928_P010	AT1G71830.1	15592873
AT3G09840.1	Zm00001d024430_P002	AT1G71830.1	15592873
AT3G09840.1	Zm00001d025580_P001	AT1G71830.1	15592873
AT3G09840.1	Zm00001d049480_P005	AT1G71830.1	15592873
AT3G09840.1	Zm00001d050868_P004	AT1G71830.1	15592873
AT3G09840.1	Zm00001d016928_P010	AT1G71830.1	16473966
AT3G09840.1	Zm00001d024430_P002	AT1G71830.1	16473966
AT3G09840.1	Zm00001d025580_P001	AT1G71830.1	16473966
AT3G09840.1	Zm00001d049480_P005	AT1G71830.1	16473966
AT3G09840.1	Zm00001d050868_P004	AT1G71830.1	16473966
AT3G09840.1	Zm00001d016928_P010	AT1G71830.1	16621602
AT3G09840.1	Zm00001d024430_P002	AT1G71830.1	16621602
AT3G09840.1	Zm00001d025580_P001	AT1G71830.1	16621602
AT3G09840.1	Zm00001d049480_P005	AT1G71830.1	16621602
AT3G09840.1	Zm00001d050868_P004	AT1G71830.1	16621602
AT3G09840.1	Zm00001d016928_P010	AT1G71830.1	17693538
AT3G09840.1	Zm00001d024430_P002	AT1G71830.1	17693538
AT3G09840.1	Zm00001d025580_P001	AT1G71830.1	17693538
AT3G09840.1	Zm00001d049480_P005	AT1G71830.1	17693538
AT3G09840.1	Zm00001d050868_P004	AT1G71830.1	17693538
AT3G09840.1	Zm00001d014124_P001	AT3G09840.1	15592873
AT3G09840.1	Zm00001d027707_P001	AT3G09840.1	15592873
AT3G09840.1	Zm00001d032117_P001	AT3G09840.1	15592873
AT3G09840.1	Zm00001d032859_P006	AT3G09840.1	15592873
AT3G09840.1	Zm00001d048409_P001	AT3G09840.1	15592873
AT3G09840.1	Zm00001d014124_P001	AT3G09840.1	16621602
AT3G09840.1	Zm00001d027707_P001	AT3G09840.1	16621602
AT3G09840.1	Zm00001d032117_P001	AT3G09840.1	16621602
AT3G09840.1	Zm00001d032859_P006	AT3G09840.1	16621602
AT3G09840.1	Zm00001d048409_P001	AT3G09840.1	16621602
AT3G09840.1	Zm00001d014124_P001	AT3G09840.1	17693538
AT3G09840.1	Zm00001d027707_P001	AT3G09840.1	17693538
AT3G09840.1	Zm00001d032117_P001	AT3G09840.1	17693538
AT3G09840.1	Zm00001d032859_P006	AT3G09840.1	17693538
AT3G09840.1	Zm00001d048409_P001	AT3G09840.1	17693538

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048409_P001	Maize	cytosol	98.14	98.51
Zm00001d014124_P001	Maize	cytosol, plasma membrane	97.27	96.79
Os03t0151800-02	Rice	cytosol, extracellular, nucleus, plasma membrane, plastid	97.03	96.79
Zm00001d032859_P006	Maize	plasma membrane	97.03	96.67
KRH67721	Soybean	endoplasmic reticulum, nucleus	93.18	93.07
KRG96011	Soybean	endoplasmic reticulum, mitochondrion, nucleus	92.69	92.57
VIT_08s0040g01480.t01	Wine grape	cytosol	91.95	92.06
KRH32530	Soybean	endoplasmic reticulum, mitochondrion	92.69	92.0
KRH19916	Soybean	endoplasmic reticulum, mitochondrion	92.44	91.99
KRH26511	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	91.95	91.95
CDY11249	Canola	cytosol	90.83	91.85
PGSC0003DMT400027096	Potato	cytosol	91.95	91.83
KRH22853	Soybean	cytosol, endoplasmic reticulum, mitochondrion	91.82	91.82
Solyc10g084050.1.1	Tomato	cytosol, nucleus, plastid, unclear	91.82	91.71
Solyc06g074980.2.1	Tomato	nucleus	91.33	91.55
AT5G03340.1	Thale cress	cytosol	91.7	91.36
PGSC0003DMT400031321	Potato	cytosol	91.08	91.3
CDY13308	Canola	cytosol	91.45	91.11
CDX73996	Canola	cytosol	91.33	91.1
Bra001297.1-P	Field mustard	cytosol	91.33	91.1
PGSC0003DMT400055513	Potato	cytosol	91.08	91.08
Bra003123.1-P	Field mustard	cytosol	91.33	90.99
CDY41581	Canola	cytosol	91.08	90.97
CDY22207	Canola	cytosol	91.2	90.86
CDY54618	Canola	cytosol	90.95	90.84
Solyc11g069720.1.1	Tomato	cytosol, extracellular, nucleus, plastid	90.58	90.81
PGSC0003DMT400050662	Potato	cytosol	90.58	90.81
AT3G53230.1	Thale cress	cytosol	91.7	90.8
Bra034089.1-P	Field mustard	cytosol	91.08	90.74
CDY07941	Canola	cytosol	90.95	90.73
CDY41316	Canola	cytosol, extracellular	90.95	90.62
Bra029795.1-P	Field mustard	cytosol	90.83	90.61
CDX80862	Canola	cytosol, plastid	90.83	90.61
KRG99061	Soybean	cytosol	22.43	90.5
AT3G09840.1	Thale cress	cytosol	90.58	90.36
KRH30601	Soybean	cytosol	89.72	89.83
Solyc09g008070.2.1	Tomato	cytosol, unclear	89.59	89.48
Bra006978.1-P	Field mustard	cytosol	89.1	88.66
KRG94277	Soybean	cytosol	22.68	88.41
CDX78154	Canola	cytosol	80.67	87.5
CDX73571	Canola	cytosol	80.42	87.35
KRH25081	Soybean	cytosol, endoplasmic reticulum, mitochondrion	77.7	86.6
GSMUA_Achr3P00260_001	Banana	cytosol	51.55	85.25
VIT_06s0061g00340.t01	Wine grape	cytosol	79.43	83.79
CDX67563	Canola	cytosol	89.1	81.8
Zm00001d032117_P001	Maize	cytosol	27.88	70.31
Zm00001d050303_P001	Maize	cytosol	66.17	67.59
Bra005733.1-P	Field mustard	cytosol	91.7	67.03
KRH45638	Soybean	cytosol	26.39	66.36
Zm00001d025776_P002	Maize	cytosol	28.25	40.14
Zm00001d009592_P001	Maize	cytosol	11.9	36.64
Zm00001d045163_P001	Maize	mitochondrion	7.81	35.8
Zm00001d035913_P002	Maize	cytosol, mitochondrion	31.1	34.24
Zm00001d015788_P001	Maize	plasma membrane	16.85	34.0
Zm00001d053649_P002	Maize	cytosol, mitochondrion	16.85	34.0
Zm00001d046539_P002	Maize	cytosol, mitochondrion	16.48	33.42
Zm00001d045566_P001	Maize	cytosol, mitochondrion	31.72	33.33
Zm00001d018309_P003	Maize	cytosol	17.35	32.86
Zm00001d027244_P001	Maize	cytosol	14.75	32.51
Zm00001d022096_P002	Maize	mitochondrion	30.48	32.5
Zm00001d002717_P001	Maize	mitochondrion	15.99	31.62
Zm00001d052078_P003	Maize	cytosol	17.47	30.85
Zm00001d053999_P001	Maize	cytosol	15.12	29.68
Zm00001d053616_P002	Maize	cytosol	15.49	29.62
Zm00001d016439_P003	Maize	cytosol, extracellular, plasma membrane	15.37	29.38
Zm00001d037481_P003	Maize	cytosol, extracellular, plasma membrane	15.61	29.3
Zm00001d050616_P002	Maize	plastid	15.61	29.03
Zm00001d022573_P001	Maize	cytosol, extracellular, plasma membrane	15.99	28.86
Zm00001d028801_P001	Maize	cytosol, extracellular	15.86	28.7
Zm00001d007215_P001	Maize	cytosol	16.11	28.02
Zm00001d018409_P007	Maize	cytosol	15.37	27.68
Zm00001d049140_P006	Maize	cytosol, plastid	33.71	27.06
Zm00001d002462_P010	Maize	mitochondrion	27.76	21.07
Zm00001d015886_P002	Maize	cytosol	12.52	18.63
Zm00001d049974_P004	Maize	peroxisome	22.8	16.5
Zm00001d033491_P001	Maize	cytosol, plasma membrane, plastid	4.46	14.23

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100278319	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300
UniProt:A0A1D6JNX1	InterPro:AAA+_ATPase	InterPro:AAA_ATPase_CDC48	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf
InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom	InterPro:Cdc48_dom2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0008150	GO:GO:0009987	GO:GO:0016787	GO:GO:0051301
ProteinID:ONL93728.1	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359	PFAM:PF02933	ScanProsite:PS00674
PANTHER:PTHR23077	PANTHER:PTHR23077:SF122	SMART:SM00382	SMART:SM01072	SMART:SM01073	SUPFAM:SSF50692
SUPFAM:SSF52540	SUPFAM:SSF54585	TIGRFAMs:TIGR01243	UniParc:UPI0001CA9530	EnsemblPlantsGene:Zm00001d027707	EnsemblPlants:Zm00001d027707_P001
EnsemblPlants:Zm00001d027707_T001	SEG:seg	:	:	:	:

Description

Cell division control protein 48 homolog D

Coordinates

chr1:-:11591119..11595660

Molecular Weight (calculated)

89689.0 Da

IEP (calculated)

4.854

GRAVY (calculated)

-0.370

Length

807 amino acids

Sequence
(BLAST)

001: MASQGEPSSS DPKGKKDYST AILERKKSPN RLVVDEATND DNSVVALHPD TMERLQLFRG DTVLLKGKKR KDTICIVLAD ETCEEPKVRM NKVVRKNLRV
101: RLSDVVSVHQ CPDVKYGKRV HILPIDDTIE GITGNLFDAF LKPYFLEAYR PLRKGDLFLV RGGMRSVEFK VIETDPAEYC IVAPDTEIFC EGEPIKREDE
201: ERLDEVGYDD VGGVRKQMAQ IRELVELPLR HPQLFKSIGV KPPKGILLYG PPGSGKTLIA RAVANETGAF FFLINGPEIM SKLAGESESN LRKAFEEAEK
301: NAPSIIFIDE IDSIAPKREK THGEVERRIV SQLLTLMDGL KSRAHVIVMG ATNRPNSIDP ALRRFGRFDR EIDIGVPDEV GRLEVLRIHT KNMKLAEDVD
401: LEIIAKDTHG YVGADLAALC TEAALQCIRE KMDIIDLEDE TIDAEILNSM AVSNDHFKTA LGTSNPSALR ETVVEVPNVS WEDIGGLENV KRELQETVQY
501: PVEHPEKFEK FGMSPSKGVL FYGPPGCGKT LLAKAIANEC QANFISVKGP ELLTMWFGES EANVREIFDK ARQSAPCVLF FDELDSIATQ RGSSVGDAGG
601: AADRVLNQLL TEMDGMNAKK TVFIIGATNR PDIIDPALLR PGRLDQLIYI PLPDEQSRLQ IFKACLRKSP VAKDVDLNAL AKYTQGFSGA DITEICQRAC
701: KYAIRENIEK DIERERRSKD NPEAMEEDEV DDIAEIKAAH FEESMKYARR SVSDADIRKY QAFAQTLQQS RGFGSEFRFP DQPTAAAAAA DPFASAAAAA
801: DDDDLYS

Best Arabidopsis Sequence Match ( AT5G03340.1 )
(BLAST)

001: MSNEPESSDS KTKKDFSTAI LERKKSPNRL VVDEAINDDN SVVSLHPTTM EKLQLFRGDT ILIKGKKRKD TVCIALADET CEEPKIRMNK VVRSNLRVRL
101: GDVISVHQCP DVKYGKRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDEVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV SNEHFHTALG NSNPSALRET VVEVPNVSWE DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG NSAGDAGGAA
601: DRVLNQLLTE MDGMNAKKTV FIIGATNRPD IIDSALLRPG RLDQLIYIPL PDEDSRLNIF KACLRKSPVA KDVDVTALAK YTQGFSGADI TEICQRACKY
701: AIRENIEKDI ENERRRSQNP EAMEEDMVDD EVSEIRAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFDS TAGVGRTTGV AAADPFATSA
801: AAADDDDLYS

Arabidopsis Description

CDC48ECell division control protein 48 homolog E [Source:UniProtKB/Swiss-Prot;Acc:Q9LZF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.