CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum

Predictor Summary:

nucleus 2
cytosol 4
endoplasmic reticulum 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 25806999
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 25806999 doi

AH Kamal, S Komatsu

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba 305-8518, Japan.

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH19916	Soybean	endoplasmic reticulum, mitochondrion	98.52	98.77
KRH67721	Soybean	endoplasmic reticulum, nucleus	96.56	97.15
KRG96011	Soybean	endoplasmic reticulum, mitochondrion, nucleus	96.56	97.15
KRH22853	Soybean	cytosol, endoplasmic reticulum, mitochondrion	92.87	93.56
KRH26511	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	92.74	93.43
Zm00001d027707_P001	Maize	cytosol, plasma membrane	92.0	92.69
CDY13308	Canola	cytosol	91.88	92.22
Zm00001d048409_P001	Maize	cytosol	91.14	92.16
KRH30601	Soybean	cytosol	91.14	91.94
Bra003123.1-P	Field mustard	cytosol	91.39	91.73
Zm00001d032859_P006	Maize	plasma membrane	91.39	91.73
Os03t0151800-02	Rice	cytosol, extracellular, nucleus, plasma membrane, plastid	91.14	91.59
Zm00001d014124_P001	Maize	cytosol, plasma membrane	91.27	91.49
AT3G53230.1	Thale cress	cytosol	91.39	91.17
KRG99061	Soybean	cytosol	22.39	91.0
Bra006978.1-P	Field mustard	cytosol	89.3	89.52
KRG94277	Soybean	cytosol	22.76	89.37
KRH25081	Soybean	cytosol, endoplasmic reticulum, mitochondrion	78.6	88.26
KRH54357	Soybean	cytosol, endoplasmic reticulum, mitochondrion	88.19	88.08
KRH63585	Soybean	endoplasmic reticulum	88.19	88.08
TraesCSU01G001000.1	Wheat	cytosol	86.1	87.17
Os10t0442600-01	Rice	cytosol, nucleus, plasma membrane, plastid	20.79	86.67
TraesCS3B01G154400.1	Wheat	cytosol	81.92	84.52
HORVU0Hr1G006340.1	Barley	cytosol	81.43	84.01
TraesCS1B01G419200.1	Wheat	cytosol	81.43	83.9
TraesCS3A01G144500.1	Wheat	cytosol	54.98	83.86
TraesCS3A01G145100.1	Wheat	cytosol	81.3	83.78
TraesCS3B01G171200.1	Wheat	cytosol	81.18	83.76
TraesCS3B01G171400.1	Wheat	cytosol	74.78	83.63
TraesCS1B01G259200.1	Wheat	cytosol	80.81	83.27
EER95525	Sorghum	cytosol	79.83	83.21
TraesCS3A01G145000.1	Wheat	cytosol	71.22	83.19
KXG40206	Sorghum	cytosol	79.95	83.12
TraesCS3B01G172100.1	Wheat	cytosol	80.69	83.04
TraesCS3B01G172000.1	Wheat	cytosol	80.07	83.04
CDX67563	Canola	cytosol	89.18	82.48
HORVU3Hr1G029450.1	Barley	cytosol	81.43	81.93
HORVU3Hr1G029440.1	Barley	cytosol	81.43	81.33
TraesCS3B01G171300.1	Wheat	cytosol	72.57	80.93
TraesCS5B01G323100.1	Wheat	cytosol	57.81	80.89
TraesCS1A01G248500.1	Wheat	cytosol	58.79	80.07
Zm00001d032117_P001	Maize	cytosol	27.18	69.06
KRH45638	Soybean	cytosol	26.32	66.67
KRH70928	Soybean	cytosol	27.8	37.29
KRH51796	Soybean	cytosol	16.85	34.42
KRH61120	Soybean	endoplasmic reticulum	16.85	34.42
KRH05868	Soybean	cytosol, nucleus	16.73	34.09
KRH15139	Soybean	cytosol, endoplasmic reticulum, nucleus	16.73	34.09
KRH44049	Soybean	nucleus	32.84	33.75
KRG97280	Soybean	cytosol, nucleus	17.47	33.33
KRH69005	Soybean	nucleus	17.47	33.33
KRH06311	Soybean	cytosol	17.47	33.33
KRH47728	Soybean	cytosol, nucleus	17.47	33.33
KRH30674	Soybean	cytosol, nucleus	15.38	30.27
KRG92899	Soybean	cytosol, nucleus	15.74	30.26
KRH33891	Soybean	endoplasmic reticulum, nucleus	15.74	30.26
KRG98107	Soybean	cytosol	15.62	30.09
KRH30673	Soybean	cytosol, nucleus	15.62	30.02
KRH46990	Soybean	nucleus	15.13	29.43
KRH44668	Soybean	cytosol, mitochondrion, nucleus	15.13	29.43
KRH67524	Soybean	nucleus	15.99	29.15
KRG95799	Soybean	cytosol, nucleus	15.99	29.15
KRH68501	Soybean	nucleus	15.13	28.94
KRH32292	Soybean	cytosol, nucleus	15.74	28.89
KRH19693	Soybean	cytosol	15.74	28.89
KRH06953	Soybean	cytosol	9.59	28.89
KRH45565	Soybean	endoplasmic reticulum	7.01	27.94
KRH10420	Soybean	mitochondrion	16.85	27.68
KRH51488	Soybean	mitochondrion	14.15	27.19
KRG96790	Soybean	mitochondrion	11.07	27.11
KRH66707	Soybean	plastid	33.7	26.2
KRG95054	Soybean	plastid	23.37	24.64
KRG96401	Soybean	mitochondrion	27.68	24.48
KRH68139	Soybean	cytosol	18.57	22.54
KRH00031	Soybean	plastid	9.47	22.32
KRH50491	Soybean	cytosol	26.2	18.85

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100806067	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300
InterPro:AAA+_ATPase	InterPro:AAA_ATPase_CDC48	EMBL:ACUP02006125	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf
InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom	InterPro:Cdc48_dom2	EnsemblPlantsGene:GLYMA_10G057100	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	UniProt:I1L8Z3	EnsemblPlants:KRH32530
ProteinID:KRH32530	ProteinID:KRH32530.1	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359	PFAM:PF02933
PFAM:PF09336	ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF122	SMART:SM00382	SMART:SM01072
SMART:SM01073	SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585	TIGRFAMs:TIGR01243	UniParc:UPI000233C4A3
InterPro:Vps4_C	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:5203274..5207901

Molecular Weight (calculated)

90030.2 Da

IEP (calculated)

4.916

GRAVY (calculated)

-0.374

Length

813 amino acids

Sequence
(BLAST)

001: MANQPESSSS DAKGTKRDFS TAILERKKAP NRLVVDEAVN DDNSVVALHP NTMEKLQLFR GDTILLKGKK RKDTICIALA DETCEEPKIR MNKVVRNNLR
101: VRLGDVVSVH QCADVKYGKR VHILPVDDTI EGVTGNLFDA YLKPYFLEAY RPVRKGDMFL VRGGMRSVEF KVIETDPAEY CVVAPDTEIF CEGEPVKRED
201: ENRLDEVGYD DVGGVRKQMA QIRELVELPL RHPQLFKSIG VKPPKGILLY GPPGSGKTLI ARAVANETGA FFFCINGPEI MSKLAGESES NLRKAFEEAE
301: KNAPSIIFID EIDSIAPKRE KTHGEVERRI VSQLLTLMDG LKSRAHVIVI GATNRPNSID PALRRFGRFD REIDIGVPDE VGRLEVLRIH TKNMKLAEDV
401: DLERIAKDTH GYVGADLAAL CTEAALQCIR EKMDVIDLED ETIDAEILNS MAVTNEHFQT ALGTSNPSAL RETVVEVPNV SWEDIGGLEN VKRELQETVQ
501: YPVEHPEKFE KFGMSPSKGV LFYGPPGCGK TLLAKAIANE CQANFISVKG PELLTMWFGE SEANVREIFD KARGSAPCVL FFDELDSIAT QRGSSVGDAG
601: GAADRVLNQL LTEMDGMSAK KTVFIIGATN RPDIIDPALL RPGRLDQLIY IPLPDEDSRH QIFKACLRKS PVSKDVDLRA LAKYTQGFSG ADITEICQRA
701: CKYAIRENIE KDIERERRKR ENPEAMEEDI EEEEVAEIKA AHFEESMKYA RRSVSDADIR KYQAFAQTLQ QSRGFGSDFT FANTSSVGAA AGAGAASDPF
801: ASAGGADEDD LYS

Best Arabidopsis Sequence Match ( AT3G53230.1 )
(BLAST)

001: MANQAESSDS KGTKKDFSTA ILEKKKAANR LVVDEAINDD NSVVSLHPDT MEKLQLFRGD TILIKGKKRK DTVCIALADE TCDEPKIRMN KVVRSNLRVR
101: LGDVISVHQC PDVKYGNRVH ILPLDDTIEG VSGNIFDAYL KPYFLEAYRP VRKGDLFLVR GGMRSIEFKV IETDPAEYCV VAPDTEIFCE GEPIKREDEE
201: RLDEVGYDDV GGVRKQMAQI RELVELPLRH PQLFKSIGVK PPKGILLYGP PGSGKTLIAR AVANETGAFF FCINGPEIMS KLAGESESNL RKAFEEAEKN
301: APSIIFIDEI DSIAPKREKT HGEVERRIVS QLLTLMDGLK SRAHVIVMGA TNRPNSIDPA LRRFGRFDRE IDIGVPDEIG RLEVLRIHTK NMKLAEDVDL
401: ERVSKDTHGY VGADLAALCT EAALQCIREK MDVIDLDDEE IDAEILNSMA VSNDHFQTAL GNSNPSALRE TVVEVPNVSW EDIGGLENVK RELQETVQYP
501: VEHPEKFEKF GMSPSKGVLF YGPPGCGKTL LAKAIANECQ ANFISIKGPE LLTMWFGESE ANVREIFDKA RQSAPCVLFF DELDSIATQR GNSVGDAGGA
601: ADRVLNQLLT EMDGMNAKKT VFIIGATNRP DIIDPALLRP GRLDQLIYIP LPDEESRYQI FKSCLRKSPV AKDVDLRALA KYTQGFSGAD ITEICQRSCK
701: YAIRENIEKD IEKERKRAES PEAMEEDEEE IAEIKAGHFE ESMKYARRSV SDADIRKYQA FAQTLQQSRG FGSEFRFPDA PTGTTGAFPG AAATVGGVDP
801: FATSGGAADD DDLYS

Arabidopsis Description

CDC48DCell division control protein 48 homolog D [Source:UniProtKB/Swiss-Prot;Acc:Q9SCN8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.