Factsheet for Bra006978.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G53230.1	Thale cress	cytosol	94.08	93.62
Bra003123.1-P	Field mustard	cytosol	93.34	93.46
VIT_08s0040g01480.t01	Wine grape	cytosol	90.38	90.94
Bra034089.1-P	Field mustard	cytosol	90.01	90.12
Bra001297.1-P	Field mustard	cytosol	89.89	90.11
KRG96011	Soybean	endoplasmic reticulum, mitochondrion, nucleus	89.77	90.1
Bra029795.1-P	Field mustard	cytosol	89.77	89.99
KRH67721	Soybean	endoplasmic reticulum, nucleus	89.27	89.6
Zm00001d048409_P001	Maize	cytosol	88.66	89.43
KRH32530	Soybean	endoplasmic reticulum, mitochondrion	89.52	89.3
KRH19916	Soybean	endoplasmic reticulum, mitochondrion	89.27	89.27
GSMUA_Achr5P15500_001	Banana	cytosol, plasma membrane	89.03	89.25
Zm00001d027707_P001	Maize	cytosol, plasma membrane	88.66	89.1
GSMUA_Achr4P26800_001	Banana	cytosol	88.78	89.0
Os03t0151800-02	Rice	cytosol, extracellular, nucleus, plasma membrane, plastid	88.41	88.63
Zm00001d014124_P001	Maize	cytosol, plasma membrane	88.53	88.53
Zm00001d032859_P006	Maize	plasma membrane	88.41	88.52
GSMUA_Achr9P23550_001	Banana	mitochondrion	85.45	85.98
TraesCSU01G001000.1	Wheat	cytosol	85.08	85.93
Os10t0442600-01	Rice	cytosol, nucleus, plasma membrane, plastid	20.35	84.62
VIT_06s0061g00340.t01	Wine grape	cytosol	78.67	83.4
TraesCS3B01G154400.1	Wheat	cytosol	80.76	83.12
HORVU0Hr1G006340.1	Barley	cytosol	80.15	82.49
TraesCS1B01G419200.1	Wheat	cytosol	80.02	82.26
TraesCS3B01G171200.1	Wheat	cytosol	79.78	82.11
TraesCS1B01G259200.1	Wheat	cytosol	79.78	82.0
TraesCS3A01G144500.1	Wheat	cytosol	53.88	81.99
EER95525	Sorghum	cytosol	78.79	81.92
TraesCS3B01G172000.1	Wheat	cytosol	79.16	81.89
TraesCS3A01G145100.1	Wheat	cytosol	79.65	81.88
TraesCS3A01G145000.1	Wheat	cytosol	70.16	81.75
KXG40206	Sorghum	cytosol	78.79	81.71
TraesCS3B01G171400.1	Wheat	cytosol	73.24	81.71
TraesCS3B01G172100.1	Wheat	cytosol	79.53	81.65
HORVU3Hr1G029450.1	Barley	cytosol	80.15	80.45
HORVU3Hr1G029440.1	Barley	cytosol	80.15	79.85
TraesCS3B01G171300.1	Wheat	cytosol	71.39	79.42
TraesCS5B01G323100.1	Wheat	cytosol	56.35	78.66
TraesCS1A01G248500.1	Wheat	cytosol	57.71	78.39
Zm00001d032117_P001	Maize	cytosol	26.63	67.5
Bra005733.1-P	Field mustard	cytosol	90.88	66.76
Bra005023.1-P	Field mustard	cytosol	12.21	41.42
Bra017378.1-P	Field mustard	cytosol	27.62	37.15
Bra033655.1-P	Field mustard	cytosol	16.77	34.09
Bra022833.1-P	Field mustard	cytosol	31.07	33.92
Bra035338.1-P	Field mustard	cytosol	16.52	33.58
Bra030922.1-P	Field mustard	cytosol	16.89	32.16
Bra039688.1-P	Field mustard	cytosol	16.89	32.16
Bra000999.1-P	Field mustard	cytosol, mitochondrion	32.55	31.69
Bra040569.1-P	Field mustard	cytosol	16.65	31.18
Bra002662.1-P	Field mustard	cytosol	15.29	30.69
Bra020378.1-P	Field mustard	cytosol	15.29	30.69
Bra006775.1-P	Field mustard	cytosol	14.67	30.43
Bra040214.1-P	Field mustard	cytosol	15.91	30.42
Bra039431.1-P	Field mustard	cytosol	15.91	30.42
Bra001152.1-P	Field mustard	cytosol	15.78	30.19
Bra011079.1-P	Field mustard	cytosol	15.66	28.67
Bra006529.1-P	Field mustard	cytosol	14.8	28.64
Bra010342.1-P	Field mustard	cytosol	15.54	28.31
Bra002279.1-P	Field mustard	cytosol	14.55	28.16
Bra007262.1-P	Field mustard	plastid	31.57	26.12
Bra024165.1-P	Field mustard	cytosol	9.62	24.15
Bra008198.1-P	Field mustard	cytosol	14.92	19.27
Bra009342.1-P	Field mustard	cytosol	25.4	18.38
Bra020079.1-P	Field mustard	cytosol	15.29	17.2
Bra032565.1-P	Field mustard	mitochondrion	27.25	11.86
Bra006530.1-P	Field mustard	cytosol, nucleus, plastid	0.86	3.17

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:AAA_ATPase_CDC48	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	EnsemblPlantsGene:Bra006978	EnsemblPlants:Bra006978.1
EnsemblPlants:Bra006978.1-P	InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom	InterPro:Cdc48_dom2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	UniProt:M4CRY6	InterPro:P-loop_NTPase
PFAM:PF00004	PFAM:PF02359	PFAM:PF02933	ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF122
SMART:SM00382	SMART:SM01072	SMART:SM01073	SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585
TIGRFAMs:TIGR01243	UniParc:UPI0002542F15	SEG:seg	:	:	:

Description

AT3G53230 (E=0.0) | cell division cycle protein 48, putative / CDC48, putative

Coordinates

chrA09:+:26632632..26636238

Molecular Weight (calculated)

89981.3 Da

IEP (calculated)

4.913

GRAVY (calculated)

-0.383

Length

811 amino acids

Sequence
(BLAST)

001: MRNQAGSSDS KGTKKDFSTA ILERKKAANR LVVDEAINDD NSIVYLHPET MEKLQLFRGD TVLIKGKKRK DTVCIALPDD TCEEPKIRMN KVVRSNLRVR
101: LGDVISLHQF PDVKYGNRVH VLPIDDTIEG VTGNIFDAYL KPYFLEAYRP VKKGDLFLVR GGMRSIEFKV IETDPAEYCV VAPNTEIFCE GEPIKREDEE
201: RLDEVGYDDV GGVRKQMAQI RELVELPLRH PQLFKSIGVK PPKGILLYGP PGTGKTLLAR AVANETGAFF LCINGPEIMS KMAGESESNL RKAFKEAEKN
301: APSIIFIDEI DSIAPKRDKT NGEVERRIVS QLLTLMDGLK ARAHVIVMGA TNRPNSIDSA LRRFGRFDRE IDIGVPDEIG RLEVLRIHTK NMKLAEDVDL
401: ERASKDTHGY VGADLAALCT EAALQCIREK MDVIDIEDEE IDAEILNSMA VTNEHYLTAL GNSNPSALRE TVVEVPNVSW EDIGGLENVK RELQETVQYP
501: VEHPEKFEKF GMSPSKGVLF YGPPGCGKTL LAKAIANECQ ANFISIKGPE LLTMWFGESE ANVREIFDKA RQSAPCVLFF DELDSIATQR GSSVGDAGGA
601: ADRVLNQLLT EMDGMSAKKT VFIIGATNRP DIIDPALLRP GRLDQLIYIP LPDEESRYQI FKSCLRKSPV AKDVDLRALA KYTQGFSGAD ITEICQRSCK
701: YAIRENIEKD IEKERKRAEA PEAMEEDEEE IADIKAGHFE ESMKYARRSV SDADIRKYQA FAQTLQQSRG FGSEFRFPQV TGAGAAATTA GGADPFATTG
801: GAAAEDDDLY S

Best Arabidopsis Sequence Match ( AT3G53230.1 )
(BLAST)

001: MANQAESSDS KGTKKDFSTA ILEKKKAANR LVVDEAINDD NSVVSLHPDT MEKLQLFRGD TILIKGKKRK DTVCIALADE TCDEPKIRMN KVVRSNLRVR
101: LGDVISVHQC PDVKYGNRVH ILPLDDTIEG VSGNIFDAYL KPYFLEAYRP VRKGDLFLVR GGMRSIEFKV IETDPAEYCV VAPDTEIFCE GEPIKREDEE
201: RLDEVGYDDV GGVRKQMAQI RELVELPLRH PQLFKSIGVK PPKGILLYGP PGSGKTLIAR AVANETGAFF FCINGPEIMS KLAGESESNL RKAFEEAEKN
301: APSIIFIDEI DSIAPKREKT HGEVERRIVS QLLTLMDGLK SRAHVIVMGA TNRPNSIDPA LRRFGRFDRE IDIGVPDEIG RLEVLRIHTK NMKLAEDVDL
401: ERVSKDTHGY VGADLAALCT EAALQCIREK MDVIDLDDEE IDAEILNSMA VSNDHFQTAL GNSNPSALRE TVVEVPNVSW EDIGGLENVK RELQETVQYP
501: VEHPEKFEKF GMSPSKGVLF YGPPGCGKTL LAKAIANECQ ANFISIKGPE LLTMWFGESE ANVREIFDKA RQSAPCVLFF DELDSIATQR GNSVGDAGGA
601: ADRVLNQLLT EMDGMNAKKT VFIIGATNRP DIIDPALLRP GRLDQLIYIP LPDEESRYQI FKSCLRKSPV AKDVDLRALA KYTQGFSGAD ITEICQRSCK
701: YAIRENIEKD IEKERKRAES PEAMEEDEEE IAEIKAGHFE ESMKYARRSV SDADIRKYQA FAQTLQQSRG FGSEFRFPDA PTGTTGAFPG AAATVGGVDP
801: FATSGGAADD DDLYS

Arabidopsis Description

CDC48DCell division control protein 48 homolog D [Source:UniProtKB/Swiss-Prot;Acc:Q9SCN8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.