Factsheet for Bra020378.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32714	Canola	cytosol	100.0	100.0
CDY02806	Canola	cytosol	99.75	99.75
Bra002662.1-P	Field mustard	cytosol	99.01	99.01
Bra006775.1-P	Field mustard	cytosol	95.79	98.98
AT5G58290.1	Thale cress	cytosol	97.77	96.81
HORVU2Hr1G107280.1	Barley	cytosol	87.13	95.14
VIT_06s0004g08220.t01	Wine grape	cytosol	95.05	91.87
KRG98107	Soybean	cytosol	95.54	91.47
KRH30674	Soybean	cytosol, nucleus	93.32	91.28
Solyc06g082660.2.1	Tomato	cytosol, nucleus	93.32	91.06
KRH30673	Soybean	cytosol, nucleus	95.3	91.02
Solyc06g082630.2.1	Tomato	cytosol, plastid	93.07	90.82
PGSC0003DMT400053010	Potato	cytosol	92.82	90.8
PGSC0003DMT400078301	Potato	cytosol	92.57	90.34
HORVU3Hr1G067470.2	Barley	cytosol	50.25	89.43
HORVU2Hr1G014000.1	Barley	cytosol	90.1	88.78
TraesCS2A01G086400.1	Wheat	cytosol	90.35	87.95
TraesCS2D01G083900.1	Wheat	golgi	90.35	87.95
TraesCS2D01G476000.1	Wheat	cytosol	90.59	87.77
TraesCS2B01G100400.1	Wheat	cytosol, plastid	90.1	87.71
TraesCS2B01G499600.1	Wheat	cytosol	90.35	87.53
Os02t0325100-01	Rice	plastid	90.59	87.35
KXG39890	Sorghum	cytosol	90.59	87.14
TraesCS2A01G475900.1	Wheat	cytosol	90.59	85.71
Zm00001d050616_P002	Maize	plastid	90.84	84.56
EER91182	Sorghum	cytosol	83.91	80.71
GSMUA_Achr7P21960_001	Banana	cytosol	93.07	77.69
Zm00001d015886_P002	Maize	cytosol	77.97	58.12
Bra005023.1-P	Field mustard	cytosol	29.7	50.21
Bra011079.1-P	Field mustard	cytosol	46.53	42.44
Bra010342.1-P	Field mustard	cytosol	46.29	42.02
Bra033655.1-P	Field mustard	cytosol	38.61	39.1
Bra035338.1-P	Field mustard	cytosol	38.61	39.1
Bra006529.1-P	Field mustard	cytosol	40.1	38.66
Bra002279.1-P	Field mustard	cytosol	39.6	38.19
Bra039431.1-P	Field mustard	cytosol	39.11	37.26
Bra040214.1-P	Field mustard	cytosol	39.11	37.26
Bra001152.1-P	Field mustard	cytosol	39.11	37.26
Bra030922.1-P	Field mustard	cytosol	38.61	36.62
Bra024165.1-P	Field mustard	cytosol	29.21	36.53
Bra039688.1-P	Field mustard	cytosol	38.37	36.38
Bra040569.1-P	Field mustard	cytosol	38.37	35.8
Bra020079.1-P	Field mustard	cytosol	39.6	22.19
Bra008198.1-P	Field mustard	cytosol	34.41	22.13
Bra017378.1-P	Field mustard	cytosol	27.97	18.74
Bra003123.1-P	Field mustard	cytosol	30.69	15.31
Bra006978.1-P	Field mustard	cytosol	30.69	15.29
Bra029795.1-P	Field mustard	cytosol	30.45	15.2
Bra001297.1-P	Field mustard	cytosol	30.45	15.2
Bra034089.1-P	Field mustard	cytosol	30.45	15.19
Bra022833.1-P	Field mustard	cytosol	26.73	14.54
Bra000999.1-P	Field mustard	cytosol, mitochondrion	27.72	13.45
Bra007262.1-P	Field mustard	plastid	27.23	11.22
Bra005733.1-P	Field mustard	cytosol	30.2	11.05
Bra009342.1-P	Field mustard	cytosol	27.23	9.81
Bra032565.1-P	Field mustard	mitochondrion	26.49	5.74
Bra006530.1-P	Field mustard	cytosol, nucleus, plastid	0.0	0.0

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.3	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	EnsemblPlantsGene:Bra020378	EnsemblPlants:Bra020378.1	EnsemblPlants:Bra020378.1-P	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0030163	GO:GO:0036402	GO:GO:1901800
UniProt:M4DV35	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674	InterPro:PSMC4	PANTHER:PTHR23073
PANTHER:PTHR23073:SF8	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01242	UniParc:UPI0002543065	:

Description

AT5G58290 (E=1e-223) RPT3 | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3); ATPase

Coordinates

chrA02:-:6466766..6468757

Molecular Weight (calculated)

45493.5 Da

IEP (calculated)

5.151

GRAVY (calculated)

-0.413

Length

404 amino acids

Sequence
(BLAST)

001: MAAAMVLDPK PSPSLMDLST PDEEDPYSRL KSLERQLEFT DIQEEYVKDE QKNLKRELLR AQEEVKRIQS VPLVIGQFME MVDQNNGIVG STTGSNYYVR
101: ILSTINREDL KPSASVALHR HSNALVDVLP PEADSSISLL SQSEKPDVSY NDIGGCDIQK QEIREAVELP LTHHELYKQI GIDPPRGVLL YGPPGTGKTM
201: LAKAVANHTT AAFIRVVGSE FVQKYLGEGP RMVRDVFRLA KENAPAIIFI DEVDAIATAR FDAQTGADRE VQRILMELLN QMDGFDQTVN VKVIMATNRA
301: DTLDPALLRP GRLDRKIEFP LPDRRQKRLV FQVCTAKMNL SDEVDLEDYV SRPDKISAAE IAAICQEAGM HAVRKNRYVI LPKDFEKGYR SNVKKPDTDF
401: EFYK

Best Arabidopsis Sequence Match ( AT5G58290.1 )
(BLAST)

001: MASAAVASMV LDPKASPALM DLSTADEEDL YGRLKSLERQ LEFTDIQEEY VKDEQKNLKR ELLRAQEEVK RIQSVPLVIG QFMEMVDQNN GIVGSTTGSN
101: YYVRILSTIN RELLKPSASV ALHRHSNALV DVLPPEADSS ISLLSQSEKP DVSYNDIGGC DIQKQEIREA VELPLTHHEL YKQIGIDPPR GVLLYGPPGT
201: GKTMLAKAVA NHTTAAFIRV VGSEFVQKYL GEGPRMVRDV FRLAKENAPA IIFIDEVDAI ATARFDAQTG ADREVQRILM ELLNQMDGFD QTVNVKVIMA
301: TNRADTLDPA LLRPGRLDRK IEFPLPDRRQ KRLVFQVCTS KMNLSDEVDL EDYVSRPDKI SAAEIAAICQ EAGMHAVRKN RYVILPKDFE KGYRANVKKP
401: DTDFEFYK

Arabidopsis Description

RPT3RPT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UAH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.