Factsheet for Zm00001d015886_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG39890	Sorghum	cytosol	67.16	86.67
Zm00001d050616_P002	Maize	plastid	67.34	84.1
HORVU2Hr1G014000.1	Barley	cytosol	63.28	83.66
Os02t0325100-01	Rice	plastid	64.58	83.53
HORVU2Hr1G107280.1	Barley	cytosol	57.01	83.51
TraesCS2A01G086400.1	Wheat	cytosol	63.84	83.37
TraesCS2B01G100400.1	Wheat	cytosol, plastid	63.84	83.37
TraesCS2D01G083900.1	Wheat	golgi	63.84	83.37
TraesCS2D01G476000.1	Wheat	cytosol	62.92	81.77
TraesCS2B01G499600.1	Wheat	cytosol	62.73	81.53
GSMUA_Achr6P12250_001	Banana	cytosol	45.02	80.53
PGSC0003DMT400006190	Potato	cytosol	48.34	80.37
TraesCS2A01G475900.1	Wheat	cytosol	63.1	80.09
CDY32995	Canola	cytosol, extracellular	58.49	78.47
CDY43865	Canola	cytosol	58.3	78.22
CDY58566	Canola	cytosol	58.3	78.22
CDX88666	Canola	cytosol	58.3	78.22
Bra002662.1-P	Field mustard	cytosol	58.3	78.22
CDY32714	Canola	cytosol	58.12	77.97
CDY02806	Canola	cytosol	58.12	77.97
Bra020378.1-P	Field mustard	cytosol	58.12	77.97
Solyc06g082660.2.1	Tomato	cytosol, nucleus	59.41	77.78
VIT_06s0004g08220.t01	Wine grape	cytosol	59.96	77.75
AT5G58290.1	Thale cress	cytosol	58.49	77.7
Solyc06g082630.2.1	Tomato	cytosol, plastid	59.23	77.54
Bra006775.1-P	Field mustard	cytosol	55.72	77.24
KRG98107	Soybean	cytosol	59.78	76.78
KRH30674	Soybean	cytosol, nucleus	58.3	76.51
KRH30673	Soybean	cytosol, nucleus	59.23	75.89
HORVU3Hr1G067470.2	Barley	cytosol	29.15	69.6
Zm00001d045163_P001	Maize	mitochondrion	13.65	42.05
Zm00001d022573_P001	Maize	cytosol, extracellular, plasma membrane	28.97	35.12
Zm00001d028801_P001	Maize	cytosol, extracellular	28.04	34.08
Zm00001d007215_P001	Maize	cytosol	28.97	33.84
Zm00001d046539_P002	Maize	cytosol, mitochondrion	23.99	32.66
Zm00001d015788_P001	Maize	plasma membrane	23.62	32.0
Zm00001d053649_P002	Maize	cytosol, mitochondrion	23.25	31.5
Zm00001d053616_P002	Maize	cytosol	24.35	31.28
Zm00001d016439_P003	Maize	cytosol, extracellular, plasma membrane	24.17	31.04
Zm00001d037481_P003	Maize	cytosol, extracellular, plasma membrane	24.35	30.7
Zm00001d018309_P003	Maize	cytosol	22.69	28.87
Zm00001d018409_P007	Maize	cytosol	23.62	28.57
Zm00001d052078_P003	Maize	cytosol	22.69	26.91
Zm00001d009592_P001	Maize	cytosol	9.41	19.47
Zm00001d032117_P001	Maize	cytosol	11.25	19.06
Zm00001d025776_P002	Maize	cytosol	18.27	17.43
Zm00001d050303_P001	Maize	cytosol	19.93	13.67
Zm00001d045566_P001	Maize	cytosol, mitochondrion	18.45	13.02
Zm00001d035913_P002	Maize	cytosol, mitochondrion	17.53	12.96
Zm00001d032859_P006	Maize	plasma membrane	18.82	12.59
Zm00001d014124_P001	Maize	cytosol, plasma membrane	18.82	12.58
Zm00001d022096_P002	Maize	mitochondrion	17.53	12.55
Zm00001d027707_P001	Maize	cytosol, plasma membrane	18.63	12.52
Zm00001d048409_P001	Maize	cytosol	18.45	12.44
Zm00001d002462_P010	Maize	mitochondrion	17.71	9.03
Zm00001d049140_P006	Maize	cytosol, plastid	15.5	8.36
Zm00001d049974_P004	Maize	peroxisome	15.31	7.44
Zm00001d002717_P001	Maize	mitochondrion	5.54	7.35
Zm00001d053999_P001	Maize	cytosol	5.35	7.06
Zm00001d027244_P001	Maize	cytosol	3.69	5.46
Zm00001d033491_P001	Maize	cytosol, plasma membrane, plastid	0.74	1.58

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100284233	Gene3D:2.40.50.140	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6H4H6
InterPro:AAA+_ATPase	ProteinID:AQK69726.1	InterPro:ATPase_AAA_core	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0036402
GO:GO:1901800	InterPro:P-loop_NTPase	PFAM:PF00004	InterPro:PSMC4	PANTHER:PTHR23073	PANTHER:PTHR23073:SF8
SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI0008451035	EnsemblPlantsGene:Zm00001d015886	EnsemblPlants:Zm00001d015886_P002	EnsemblPlants:Zm00001d015886_T002
SEG:seg	:	:	:	:	:

Description

26S protease regulatory subunit 6B homolog

Coordinates

chr5:+:129025903..129041194

Molecular Weight (calculated)

61326.6 Da

IEP (calculated)

8.306

GRAVY (calculated)

-0.464

Length

542 amino acids

Sequence
(BLAST)

001: MSAATTAPTP AVATPMAPPP SYPASSTISA SVAASVEEED DLYGRLKSLQ RHMEFVEIQE EYVKDEQKNL KRELLRAQEE VKRIQSVPLV IGQFMEMVDG
101: NNGIVGSTTG SNYYVRILST INRELLKPSA SVALHRHSNA LVDVLPPEAD SSISLLGSSE KPNVTYNDIG GCDIQKQEIR EAVELPLTHH ELYKQIGIDP
201: PRGVLLYGPP GTGKTMLAKA VAHHTTAAFI RVVGSEFVQK YLGEGPRMVR DVFRLAKENA PAIIFIDEVD AIATARFDAQ TGADREVQRI LMELLNQVCT
301: AKMNLSDEVD LEDYVSRPDK ISAADRKSHL VTFSSGQHTS QIDFVLLRKE DRHACLDCKV IPGECVVTQH KLVVADFRFK IRLQRNKHNK VTRTKWWKLK
401: GDVAQTFKER VIEEGPWAEE GDTNIMWRKM ATCIRKIALE EFGLSQGNRR EVKDTWWWNE DVQKAIKEKK DCYKRLHHDK CADNIEKYMI AKKSAKRAIA
501: AICQEAGMHA VRKNRYVILP KDFEKGYRTN VKKPETDFDF YK

Best Arabidopsis Sequence Match ( AT2G20140.1 )
(BLAST)

001: MGQGPSGGLN RQGDRKPDGG EKKEKKFEPA APPARVGRKQ RKQKGPEAAA RLPTVTPSTK CKLRLLKLER IKDYLLMEEE FVANQERLKP QEEKAEEDRS
101: KVDDLRGTPM SVGNLEELID ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE KAPLESYADI GGLEAQIQEI
201: KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA
301: NSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD IKTRRRIFQI HTSKMTLAED VNLEEFVMTK DEFSGADIKA
401: ICTEAGLLAL RERRMKVTHV DFKKAKEKVM FKKKEGVPEG LYM

Arabidopsis Description

RPT2BRPT2b [Source:UniProtKB/TrEMBL;Acc:A0A178VM16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.