Factsheet for Zm00001d018409_P007

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014514_P001
Zm00001d014833_P001
Zm00001d017985_P001
Zm00001d020426_P001
Zm00001d032224_P001
Zm00001d044748_P002
Zm00001d050383_P001
Zm00001d052289_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G05530.1	Zm00001d014514_P001	AT1G59900.1	24846764
AT3G05530.1	Zm00001d014833_P001	AT1G59900.1	24846764
AT3G05530.1	Zm00001d017985_P001	AT1G59900.1	24846764
AT3G05530.1	Zm00001d044748_P002	AT1G59900.1	24846764
AT3G05530.1	Zm00001d052289_P001	AT1G59900.1	24846764
AT3G05530.1	Zm00001d020426_P001	AT3G25860.1	24846764
AT3G05530.1	Zm00001d032224_P001	AT3G25860.1	24846764
AT3G05530.1	Zm00001d050383_P001	AT3G25860.1	24846764

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG31298	Sorghum	cytosol	93.08	97.43
Zm00001d037481_P003	Maize	cytosol, extracellular, plasma membrane	91.52	95.35
Os02t0803700-01	Rice	cytosol, nucleus, plastid	89.96	93.94
GSMUA_Achr5P04520_001	Banana	cytosol	83.93	92.84
VIT_14s0060g02260.t01	Wine grape	cytosol	83.48	92.35
VIT_05s0020g01180.t01	Wine grape	cytosol	86.83	91.96
KRG92899	Soybean	cytosol, nucleus	86.61	91.73
KRH33891	Soybean	endoplasmic reticulum, nucleus	86.38	91.49
Solyc01g099760.2.1	Tomato	nucleus, plastid	85.71	90.78
PGSC0003DMT400063574	Potato	cytosol	85.71	90.78
AT3G05530.1	Thale cress	cytosol	85.49	90.33
Bra001152.1-P	Field mustard	cytosol	85.27	90.09
CDY40714	Canola	cytosol	85.27	90.09
CDY27761	Canola	cytosol	85.27	90.09
CDY05176	Canola	cytosol	85.27	90.09
CDX74142	Canola	cytosol	85.27	90.09
Bra039431.1-P	Field mustard	cytosol	85.27	90.09
CDY18801	Canola	cytosol	85.04	89.86
CDY18782	Canola	cytosol	85.04	89.86
Bra040214.1-P	Field mustard	cytosol	85.04	89.86
Zm00001d045163_P001	Maize	mitochondrion	35.04	89.2
KRH68501	Soybean	nucleus	81.92	86.35
KRG96790	Soybean	mitochondrion	60.04	81.02
Zm00001d028801_P001	Maize	cytosol, extracellular	39.51	39.69
Zm00001d022573_P001	Maize	cytosol, extracellular, plasma membrane	39.51	39.6
Zm00001d053616_P002	Maize	cytosol	37.05	39.34
Zm00001d016439_P003	Maize	cytosol, extracellular, plasma membrane	37.05	39.34
Zm00001d053649_P002	Maize	cytosol, mitochondrion	34.82	39.0
Zm00001d015788_P001	Maize	plasma membrane	34.82	39.0
Zm00001d046539_P002	Maize	cytosol, mitochondrion	34.6	38.94
Zm00001d018309_P003	Maize	cytosol	36.61	38.5
Zm00001d007215_P001	Maize	cytosol	39.51	38.15
Zm00001d050616_P002	Maize	plastid	35.27	36.41
Zm00001d052078_P003	Maize	cytosol	36.61	35.89
Zm00001d032117_P001	Maize	cytosol	18.75	26.25
Zm00001d015886_P002	Maize	cytosol	28.57	23.62
Zm00001d025776_P002	Maize	cytosol	26.79	21.13
Zm00001d009592_P001	Maize	cytosol	11.16	19.08
Zm00001d050303_P001	Maize	cytosol	27.68	15.7
Zm00001d048409_P001	Maize	cytosol	27.9	15.55
Zm00001d027707_P001	Maize	cytosol, plasma membrane	27.68	15.37
Zm00001d032859_P006	Maize	plasma membrane	27.46	15.19
Zm00001d014124_P001	Maize	cytosol, plasma membrane	27.46	15.17
Zm00001d022096_P002	Maize	mitochondrion	24.55	14.53
Zm00001d035913_P002	Maize	cytosol, mitochondrion	23.66	14.46
Zm00001d045566_P001	Maize	cytosol, mitochondrion	24.55	14.32
Zm00001d049140_P006	Maize	cytosol, plastid	27.23	12.14
Zm00001d002462_P010	Maize	mitochondrion	23.88	10.07
Zm00001d053999_P001	Maize	cytosol	7.37	8.03
Zm00001d049974_P004	Maize	peroxisome	19.87	7.98
Zm00001d002717_P001	Maize	mitochondrion	6.92	7.6
Zm00001d027244_P001	Maize	cytosol	5.36	6.56
Zm00001d033491_P001	Maize	cytosol, plasma membrane, plastid	0.89	1.58

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.5	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	UniProt:A0A1D6HNL9
InterPro:AAA+_ATPase	ProteinID:AQK75887.1	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0030163	GO:GO:0036402
GO:GO:1901800	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674	InterPro:PSMC3	PANTHER:PTHR23073
PANTHER:PTHR23073:SF7	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01242	UniParc:UPI0008439632	EnsemblPlantsGene:Zm00001d018409
EnsemblPlants:Zm00001d018409_P007	EnsemblPlants:Zm00001d018409_T007	SEG:seg	:	:	:

Description

26S protease regulatory subunit 6A homolog A

Coordinates

chr5:-:220204951..220209169

Molecular Weight (calculated)

49699.4 Da

IEP (calculated)

4.573

GRAVY (calculated)

-0.381

Length

448 amino acids

Sequence
(BLAST)

001: MSSSAPAPAA MAVDDAEDDQ LASMSTEEIT RASRLLDNEI RVHKDELQRS NLELESIKEK TKENQEKIKL NKQLPYLVGN IVEILEMNPE DEAEEDGANI
101: DLDSQRKGKC VVLKTSTRQT IFLPVIGLVD PDKLKPGDLV GVNKDSYLIL DTLPSEYDSR VKAMEVDEKP TEDYNDIGGL EKQIQELVEA IVLPMTHKDR
201: FQKLGIRPPK GVLLYGPPGT GKTLMARACA AQTNATFLKL AGPQLVQMFI GDGAKLVRDA FQLAKEKAPC IIFIDEIDAI GTKRFDSEVS GDREVQRTML
301: ELLNQLDGFS SDERIKVIAA TNRADILDPA LMRSGRLDRK IEFPHPSEEA RARILQIHSR KMNVNPDVNF EELARSTDDF NGAQLKAVCV EAGMLALRRD
401: ATEVTHEDFN EGIIQVQGLE ITEQALRGER PVLGDHSVVC DTAIVWAG

Best Arabidopsis Sequence Match ( AT1G09100.1 )
(BLAST)

001: MATAMAEDTS FEGDQLASMT TDDIGRASRL LANEIRILKE ESQRTNLDLE SVKEKIKENQ EKIKLNKQLP YLVGNIVEIL EMSPEDDAEE DGANIDLDSQ
101: RKGKCVVLKT STRQTIFLPV VGLVDPDTLK PGDLVGVNKD SYLILDTLPS EYDSRVKAME VDEKPTEDYN DIGGLEKQIQ ELVEAIVLPM THKEQFEKLG
201: IRPPKGVLLY GPPGTGKTLM ARACAAQTNA TFLKLAGPQL VQMFIGDGAK LVRDAFLLAK EKSPCIIFID EIDAIGTKRF DSEVSGDREV QRTMLELLNQ
301: LDGFSSDDRI KVIAATNRAD ILDPALMRSG RLDRKIEFPH PTEEARGRIL QIHSRKMNVN ADVNFEELAR STDDFNGAQL KAVCVEAGML ALRRDATEVN
401: HEDFNEGIIQ VQAKKKASLN YYA

Arabidopsis Description

RPT5B26S proteasome regulatory subunit 6A homolog B [Source:UniProtKB/Swiss-Prot;Acc:O04019]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.