CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33891	Soybean	endoplasmic reticulum, nucleus	99.76	99.76
GSMUA_Achr9P13230_001	Banana	cytosol	92.91	97.04
GSMUA_Achr5P04520_001	Banana	cytosol	91.96	96.05
HORVU6Hr1G087650.1	Barley	cytosol, plasma membrane	87.0	95.83
PGSC0003DMT400063574	Potato	cytosol	95.51	95.51
Solyc01g099760.2.1	Tomato	nucleus, plastid	95.51	95.51
Bra039431.1-P	Field mustard	cytosol	95.27	95.05
CDY27761	Canola	cytosol	95.27	95.05
CDY05176	Canola	cytosol	95.27	95.05
CDY40714	Canola	cytosol	95.04	94.81
CDY18801	Canola	cytosol	95.04	94.81
CDY18782	Canola	cytosol	95.04	94.81
Bra001152.1-P	Field mustard	cytosol	95.04	94.81
CDX74142	Canola	cytosol	95.04	94.81
Bra040214.1-P	Field mustard	cytosol	95.04	94.81
Os06t0173100-01	Rice	cytosol, nucleus, plasma membrane	95.04	93.71
Zm00001d037481_P003	Maize	cytosol, extracellular, plasma membrane	94.8	93.26
EER87942	Sorghum	cytosol	94.56	93.02
Os02t0803700-01	Rice	cytosol, nucleus, plastid	94.33	93.01
KXG31298	Sorghum	cytosol	93.85	92.76
KRH68501	Soybean	nucleus	93.14	92.71
Zm00001d045163_P001	Maize	mitochondrion	38.06	91.48
TraesCS3B01G457100.1	Wheat	cytosol, golgi	92.67	90.32
TraesCS3A01G421900.1	Wheat	cytosol	92.67	90.32
TraesCS3D01G417000.1	Wheat	cytosol	92.44	90.09
TraesCS7B01G036400.1	Wheat	cytosol	90.54	89.7
TraesCS7D01G134800.1	Wheat	cytosol	90.31	89.04
KRG96790	Soybean	mitochondrion	68.32	87.05
Zm00001d018409_P007	Maize	cytosol	91.73	86.61
KRH19693	Soybean	cytosol	42.32	40.41
KRH32292	Soybean	cytosol, nucleus	42.32	40.41
KRH46990	Soybean	nucleus	39.72	40.19
KRH44668	Soybean	cytosol, mitochondrion, nucleus	39.72	40.19
KRH67524	Soybean	nucleus	42.08	39.91
KRG95799	Soybean	cytosol, nucleus	42.08	39.91
KRH61120	Soybean	endoplasmic reticulum	37.35	39.7
KRH51796	Soybean	cytosol	37.35	39.7
KRH05868	Soybean	cytosol, nucleus	37.12	39.35
KRH15139	Soybean	cytosol, endoplasmic reticulum, nucleus	37.12	39.35
KRG97280	Soybean	cytosol, nucleus	39.24	38.97
KRH69005	Soybean	nucleus	39.24	38.97
KRH47728	Soybean	cytosol, nucleus	39.24	38.97
KRH06311	Soybean	cytosol	39.24	38.97
KRH30674	Soybean	cytosol, nucleus	36.88	37.77
KRG98107	Soybean	cytosol	37.59	37.68
KRH30673	Soybean	cytosol, nucleus	37.59	37.59
KRH06953	Soybean	cytosol	23.88	37.41
KRH45565	Soybean	endoplasmic reticulum	17.97	37.25
KRH51488	Soybean	mitochondrion	32.62	32.62
KRH00031	Soybean	plastid	25.77	31.59
KRG99061	Soybean	cytosol	14.42	30.5
KRG94277	Soybean	cytosol	12.77	26.09
KRH45638	Soybean	cytosol	14.89	19.63
KRH70928	Soybean	cytosol	27.19	18.98
KRH25081	Soybean	cytosol, endoplasmic reticulum, mitochondrion	28.13	16.44
KRH67721	Soybean	endoplasmic reticulum, nucleus	30.73	16.09
KRG96011	Soybean	endoplasmic reticulum, mitochondrion, nucleus	30.5	15.97
KRH19916	Soybean	endoplasmic reticulum, mitochondrion	30.26	15.78
KRH32530	Soybean	endoplasmic reticulum, mitochondrion	30.26	15.74
KRH26511	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	30.02	15.74
KRH54357	Soybean	cytosol, endoplasmic reticulum, mitochondrion	30.26	15.72
KRH22853	Soybean	cytosol, endoplasmic reticulum, mitochondrion	29.79	15.61
KRH63585	Soybean	endoplasmic reticulum	30.02	15.6
KRH30601	Soybean	cytosol	29.31	15.38
KRH10420	Soybean	mitochondrion	17.02	14.55
KRH44049	Soybean	nucleus	26.95	14.41
KRG96401	Soybean	mitochondrion	26.71	12.3
KRH66707	Soybean	plastid	29.08	11.76
KRH68139	Soybean	cytosol	17.73	11.19
KRH50491	Soybean	cytosol	23.88	8.94
KRG95054	Soybean	plastid	15.6	8.56

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100788486	MapMan:19.2.6.2.1.5	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300
UniProt:A0A0R0ERR0	InterPro:AAA+_ATPase	EMBL:ACUP02012770	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ncoils:Coil
EnsemblPlantsGene:GLYMA_20G236500	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0030163	GO:GO:0036402
GO:GO:1901800	EnsemblPlants:KRG92899	ProteinID:KRG92899	ProteinID:KRG92899.1	InterPro:P-loop_NTPase	PFAM:PF00004
ScanProsite:PS00674	InterPro:PSMC3	PANTHER:PTHR23073	PANTHER:PTHR23073:SF7	SMART:SM00382	SUPFAM:SSF52540
TIGRFAMs:TIGR01242	UniParc:UPI000189D0C0	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:46875901..46879968

Molecular Weight (calculated)

47457.9 Da

IEP (calculated)

4.720

GRAVY (calculated)

-0.434

Length

423 amino acids

Sequence
(BLAST)

001: MASAMVEDAN FEDDQLANMT TDDIVRASRL LDNEIRILKE ELQRTNLELE SYKDKIKENQ EKIKLNKQLP YLVGNIVEIL EMNPEDEAEE DGANIDLDSQ
101: RKGKCVVLKT STRQTIFLPV VGLVDPDKLK PGDLVGVNKD SYLILDTLPS EYDSRVKAME VDEKPTEDYN DIGGLEKQIQ ELVEAIVLPM THKERFQKLG
201: VRPPKGVLLY GPPGTGKTLM ARACAAQTNA TFLKLAGPQL VQMFIGDGAK LVRDAFQLAK EKSPCIIFID EIDAIGTKRF DSEVSGDREV QRTMLELLNQ
301: LDGFSSDDRI KVIAATNRAD ILDPALMRSG RLDRKIEFPH PSEEARARIL QIHSRKMNVH PDVNFEELAR STDDFNGAQL KAVCVEAGML ALRRDATEVN
401: HEDFNEGIIQ VQAKKKASLN YYA

Best Arabidopsis Sequence Match ( AT3G05530.1 )
(BLAST)

001: MATPMVEDTS SFEEDQLASM STEDITRATR LLDNEIRILK EDAQRTNLEC DSYKEKIKEN QEKIKLNKQL PYLVGNIVEI LEMNPEDDAE EDGANIDLDS
101: QRKGKCVVLK TSTRQTIFLP VVGLVDPDSL KPGDLVGVNK DSYLILDTLP SEYDSRVKAM EVDEKPTEDY NDIGGLEKQI QELVEAIVLP MTHKERFEKL
201: GVRPPKGVLL YGPPGTGKTL MARACAAQTN ATFLKLAGPQ LVQMFIGDGA KLVRDAFQLA KEKAPCIIFI DEIDAIGTKR FDSEVSGDRE VQRTMLELLN
301: QLDGFSSDER IKVIAATNRA DILDPALMRS GRLDRKIEFP HPTEEARARI LQIHSRKMNV HPDVNFEELA RSTDDFNGAQ LKAVCVEAGM LALRRDATEV
401: NHEDFNEGII QVQAKKKASL NYYA

Arabidopsis Description

RPT5A26S proteasome regulatory subunit 6A homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9SEI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.