Factsheet for TraesCS3A01G421900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3B01G372900.1
TraesCS5A01G206600.2
TraesCS5A01G476700.1
TraesCS5B01G204800.1
TraesCS5B01G489600.1
TraesCS5D01G212800.1
TraesCS5D01G490000.1
TraesCS6A01G311800.1
TraesCS6B01G342000.1
TraesCS6D01G291100.1
TraesCS7A01G238900.1
TraesCS7B01G103800.2
TraesCS7D01G199900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G05530.1	TraesCS6A01G311800.1	AT1G59900.1	24846764
AT3G05530.1	TraesCS6B01G342000.1	AT1G59900.1	24846764
AT3G05530.1	TraesCS6D01G291100.1	AT1G59900.1	24846764
AT3G05530.1	TraesCS7A01G238900.1	AT1G59900.1	24846764
AT3G05530.1	TraesCS7B01G103800.2	AT1G59900.1	24846764
AT3G05530.1	TraesCS7D01G199900.1	AT1G59900.1	24846764
AT3G05530.1	TraesCS3B01G372900.1	AT3G25860.1	24846764
AT3G05530.1	TraesCS5A01G206600.2	AT3G25860.1	24846764
AT3G05530.1	TraesCS5A01G476700.1	AT3G25860.1	24846764
AT3G05530.1	TraesCS5B01G204800.1	AT3G25860.1	24846764
AT3G05530.1	TraesCS5B01G489600.1	AT3G25860.1	24846764
AT3G05530.1	TraesCS5D01G212800.1	AT3G25860.1	24846764
AT3G05530.1	TraesCS5D01G490000.1	AT3G25860.1	24846764

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G457100.1	Wheat	cytosol, golgi	100.0	100.0
HORVU6Hr1G087650.1	Barley	cytosol, plasma membrane	88.48	100.0
TraesCS3D01G417000.1	Wheat	cytosol	99.77	99.77
Os02t0803700-01	Rice	cytosol, nucleus, plastid	93.32	94.41
KXG31298	Sorghum	cytosol	93.09	94.39
Os06t0173100-01	Rice	cytosol, nucleus, plasma membrane	93.09	94.17
GSMUA_Achr9P13230_001	Banana	cytosol	87.79	94.07
VIT_14s0060g02260.t01	Wine grape	cytosol	87.79	94.07
EER87942	Sorghum	cytosol	93.09	93.95
GSMUA_Achr5P04520_001	Banana	cytosol	87.33	93.58
VIT_05s0020g01180.t01	Wine grape	cytosol	91.01	93.38
KRG92899	Soybean	cytosol, nucleus	90.32	92.67
CDY27761	Canola	cytosol	90.32	92.45
CDY05176	Canola	cytosol	90.32	92.45
Bra039431.1-P	Field mustard	cytosol	90.32	92.45
KRH33891	Soybean	endoplasmic reticulum, nucleus	90.09	92.44
CDY40714	Canola	cytosol	90.09	92.22
CDY18801	Canola	cytosol	90.09	92.22
AT3G05530.1	Thale cress	cytosol	90.09	92.22
CDY18782	Canola	cytosol	90.09	92.22
CDX74142	Canola	cytosol	90.09	92.22
Bra040214.1-P	Field mustard	cytosol	90.09	92.22
Bra001152.1-P	Field mustard	cytosol	90.09	92.22
Zm00001d045163_P001	Maize	mitochondrion	37.33	92.05
Solyc01g099760.2.1	Tomato	nucleus, plastid	89.4	91.73
PGSC0003DMT400063574	Potato	cytosol	89.4	91.73
KRH68501	Soybean	nucleus	85.25	87.06
KRG96790	Soybean	mitochondrion	62.67	81.93
TraesCS7A01G378600.1	Wheat	cytosol	37.79	41.0
TraesCS2A01G090000.1	Wheat	cytosol	41.71	40.31
TraesCS4A01G115000.1	Wheat	cytosol	41.71	40.22
TraesCS6A01G177600.1	Wheat	cytosol	38.25	39.71
TraesCS7A01G156800.1	Wheat	cytosol	38.94	39.67
TraesCS6A01G162700.2	Wheat	cytosol, golgi	36.18	39.25
TraesCS7A01G372600.1	Wheat	cytosol	38.25	39.24
TraesCS2A01G086400.1	Wheat	cytosol	37.1	38.8
TraesCS7A01G545700.1	Wheat	cytosol	34.56	37.69
TraesCS2A01G475900.1	Wheat	cytosol	36.87	37.47
TraesCS2A01G471400.1	Wheat	cytosol	34.79	33.11
TraesCS2A01G355200.1	Wheat	cytosol	29.26	22.4
TraesCS3A01G144500.1	Wheat	cytosol	20.97	17.07
TraesCS3A01G145100.1	Wheat	cytosol	29.49	16.22
TraesCS1A01G190300.1	Wheat	cytosol	29.49	15.84
TraesCS3A01G450800.1	Wheat	mitochondrion	27.19	15.82
TraesCS1A01G222100.1	Wheat	cytosol	28.8	15.62
TraesCS4A01G035700.1	Wheat	plastid	29.03	15.5
TraesCS4A01G035500.1	Wheat	golgi, nucleus	29.03	15.4
TraesCS3A01G145000.1	Wheat	cytosol	24.65	15.37
TraesCS4A01G463300.1	Wheat	mitochondrion	27.19	15.03
TraesCS7A01G025800.1	Wheat	mitochondrion	27.19	15.03
TraesCS2A01G060000.1	Wheat	cytosol	29.26	14.7
TraesCS1A01G248500.1	Wheat	cytosol	18.43	13.4
TraesCS1A01G071300.1	Wheat	cytosol, plastid	28.34	12.24
TraesCS4A01G204700.1	Wheat	cytosol, plastid	28.34	12.23
TraesCS2A01G457600.3	Wheat	mitochondrion	26.04	12.11
TraesCS7A01G277100.1	Wheat	peroxisome	22.58	8.99
TraesCS5A01G301500.1	Wheat	mitochondrion	21.2	8.55

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.5	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ncoils:Coil	GO:GO:0000166	GO:GO:0000502	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009553	GO:GO:0009555	GO:GO:0009987	GO:GO:0010498	GO:GO:0016787
GO:GO:0019538	GO:GO:0030163	GO:GO:0036402	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674
InterPro:PSMC3	PANTHER:PTHR23073	PANTHER:PTHR23073:SF7	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01242
EnsemblPlantsGene:TraesCS3A01G421900	EnsemblPlants:TraesCS3A01G421900.1	TIGR:cd00009	SEG:seg	:	:

Description

No Description!

Coordinates

chr3A:+:663258103..663264744

Molecular Weight (calculated)

48256.6 Da

IEP (calculated)

4.557

GRAVY (calculated)

-0.412

Length

434 amino acids

Sequence
(BLAST)

001: MSSSPTPAPD AGAAAMAVDD SSETDQLDSM STEDIVRATR LLDNEVRVLK DELQRNNLEL ENVKDKIKEN QEKIKLNKQL PYLVGNIVEI LEMNPEDEAE
101: EDGANIDLDS QRKGKCVVLK TSTRQTIFLP VIGLVDPDNL KPGDLVGVNK DSYLILDTLP SEYDSRVKAM EVDEKPTEDY NDIGGLEKEI QELVEAIVLP
201: MTHKEQFQKL GIRPPKGVLL YGPPGTGKTL MARACAAQTN ATFLKLAGPQ LVQMFIGDGA KLVRDAFELA KEKAPCIIFI DEIDAIGTKR FDSEVSGDRE
301: VQRTMLELLN QLDGFSSDER IKVIAATNRA DILDPALLRS GRLDRKIEFP HPTEEARARI LQIHSRKMNV HPDVNFEELA RSTDDFNGAQ LKAVCVEAGM
401: LALRRDATEV IHEDFNEGII QVQAKKKSSL NYYA

Best Arabidopsis Sequence Match ( AT3G05530.1 )
(BLAST)

001: MATPMVEDTS SFEEDQLASM STEDITRATR LLDNEIRILK EDAQRTNLEC DSYKEKIKEN QEKIKLNKQL PYLVGNIVEI LEMNPEDDAE EDGANIDLDS
101: QRKGKCVVLK TSTRQTIFLP VVGLVDPDSL KPGDLVGVNK DSYLILDTLP SEYDSRVKAM EVDEKPTEDY NDIGGLEKQI QELVEAIVLP MTHKERFEKL
201: GVRPPKGVLL YGPPGTGKTL MARACAAQTN ATFLKLAGPQ LVQMFIGDGA KLVRDAFQLA KEKAPCIIFI DEIDAIGTKR FDSEVSGDRE VQRTMLELLN
301: QLDGFSSDER IKVIAATNRA DILDPALMRS GRLDRKIEFP HPTEEARARI LQIHSRKMNV HPDVNFEELA RSTDDFNGAQ LKAVCVEAGM LALRRDATEV
401: NHEDFNEGII QVQAKKKASL NYYA

Arabidopsis Description

RPT5A26S proteasome regulatory subunit 6A homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9SEI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.