Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 6
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G178400.1 | |
| TraesCS6B01G205800.2 | |
| TraesCS6D01G166200.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G19990.1 | TraesCS6A01G178400.1 | AT5G19960.1 | 21798944 |
| AT5G19990.1 | TraesCS6B01G205800.2 | AT5G19960.1 | 21798944 |
| AT5G19990.1 | TraesCS6D01G166200.2 | AT5G19960.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G207100.1 | Wheat | cytosol | 100.0 | 100.0 |
| TraesCS6D01G166700.1 | Wheat | cytosol, golgi | 100.0 | 100.0 |
| Zm00001d053616_P002 | Maize | cytosol | 97.85 | 96.92 |
| Zm00001d016439_P003 | Maize | cytosol, extracellular, plasma membrane | 97.61 | 96.68 |
| Os02t0205300-01 | Rice | cytosol | 97.85 | 96.46 |
| TraesCS7A01G372600.1 | Wheat | cytosol | 95.45 | 94.33 |
| VIT_04s0008g04690.t01 | Wine grape | cytosol | 92.82 | 92.38 |
| VIT_09s0002g05800.t01 | Wine grape | cytosol | 92.11 | 92.33 |
| CDX70903 | Canola | cytosol | 91.87 | 92.31 |
| GSMUA_Achr10P... | Banana | cytosol | 92.58 | 92.14 |
| CDY35832 | Canola | cytosol | 92.34 | 92.12 |
| AT5G19990.1 | Thale cress | cytosol | 92.34 | 92.12 |
| Bra002279.1-P | Field mustard | cytosol | 91.87 | 91.65 |
| KRH44668 | Soybean | cytosol, mitochondrion, nucleus | 91.39 | 91.39 |
| Bra006529.1-P | Field mustard | cytosol | 91.39 | 91.17 |
| Solyc05g018570.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 90.91 | 91.13 |
| Solyc05g018590.2.1 | Tomato | nucleus | 90.91 | 91.13 |
| KRH46990 | Soybean | nucleus | 90.91 | 90.91 |
| HORVU6Hr1G036990.7 | Barley | cytosol | 100.0 | 90.48 |
| AT5G20000.1 | Thale cress | cytosol | 90.43 | 90.21 |
| PGSC0003DMT400038718 | Potato | cytosol | 80.86 | 78.06 |
| CDX88865 | Canola | cytosol, extracellular | 87.8 | 58.35 |
| CDY42324 | Canola | cytosol, extracellular | 91.63 | 53.42 |
| CDY44958 | Canola | cytosol, plasma membrane | 91.87 | 53.26 |
| Bra020079.1-P | Field mustard | cytosol | 91.63 | 53.12 |
| TraesCS7A01G156800.1 | Wheat | cytosol | 45.69 | 44.84 |
| TraesCS6A01G162700.2 | Wheat | cytosol, golgi | 41.39 | 43.25 |
| TraesCS7A01G378600.1 | Wheat | cytosol | 40.91 | 42.75 |
| TraesCS7A01G545700.1 | Wheat | cytosol | 39.71 | 41.71 |
| TraesCS4A01G115000.1 | Wheat | cytosol | 41.63 | 38.67 |
| TraesCS2A01G090000.1 | Wheat | cytosol | 41.39 | 38.53 |
| TraesCS3A01G421900.1 | Wheat | cytosol | 39.71 | 38.25 |
| TraesCS2A01G086400.1 | Wheat | cytosol | 37.8 | 38.07 |
| TraesCS2A01G475900.1 | Wheat | cytosol | 37.56 | 36.77 |
| TraesCS2A01G471400.1 | Wheat | cytosol | 38.04 | 34.87 |
| TraesCS2A01G355200.1 | Wheat | cytosol | 29.19 | 21.52 |
| TraesCS3A01G450800.1 | Wheat | mitochondrion | 29.19 | 16.35 |
| TraesCS4A01G463300.1 | Wheat | mitochondrion | 30.62 | 16.31 |
| TraesCS7A01G025800.1 | Wheat | mitochondrion | 30.62 | 16.31 |
| TraesCS3A01G144500.1 | Wheat | cytosol | 20.57 | 16.14 |
| TraesCS3A01G145100.1 | Wheat | cytosol | 28.95 | 15.34 |
| TraesCS4A01G035500.1 | Wheat | golgi, nucleus | 29.67 | 15.16 |
| TraesCS4A01G035700.1 | Wheat | plastid | 29.43 | 15.13 |
| TraesCS1A01G222100.1 | Wheat | cytosol | 27.99 | 14.62 |
| TraesCS1A01G190300.1 | Wheat | cytosol | 28.23 | 14.6 |
| TraesCS2A01G060000.1 | Wheat | cytosol | 30.14 | 14.58 |
| TraesCS3A01G145000.1 | Wheat | cytosol | 23.68 | 14.22 |
| TraesCS1A01G248500.1 | Wheat | cytosol | 17.94 | 12.56 |
| TraesCS2A01G457600.3 | Wheat | mitochondrion | 27.27 | 12.22 |
| TraesCS4A01G204700.1 | Wheat | cytosol, plastid | 28.71 | 11.93 |
| TraesCS1A01G071300.1 | Wheat | cytosol, plastid | 27.51 | 11.44 |
| TraesCS7A01G277100.1 | Wheat | peroxisome | 26.08 | 10.0 |
| TraesCS5A01G301500.1 | Wheat | mitochondrion | 24.64 | 9.57 |
| Bra006530.1-P | Field mustard | cytosol, nucleus, plastid | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.8.60 | MapMan:19.2.6.2.1.6 | Gene3D:2.40.50.140 | InterPro:26S_Psome_P45-like | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase |
| InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0030163 |
| InterPro:P-loop_NTPase | PFAM:PF00004 | ScanProsite:PS00674 | PANTHER:PTHR23073 | PANTHER:PTHR23073:SF57 | SMART:SM00382 |
| SUPFAM:SSF52540 | TIGRFAMs:TIGR01242 | EnsemblPlantsGene:TraesCS6A01G177600 | EnsemblPlants:TraesCS6A01G177600.1 | TIGR:cd00009 | SEG:seg |
Description
No Description!
Coordinates
chr6A:-:198364318..198367712
Molecular Weight (calculated)
46766.2 Da
IEP (calculated)
9.513
GRAVY (calculated)
-0.368
Length
418 amino acids
Sequence
(BLAST)
(BLAST)
001: MATVAMDISK PPPAASGDES AKGARGGGEG LRQYYLQHIH DLQLQIRQKT HNLNRLEAQR NDLNSRVRML REELQLLQEP GSYVGEVVKV MGKSKVLVKV
101: HPEGKYVVDI DKSIDITKIT PSTRVALRND SYMLHLVLPS KVDPLVNLMK VEKVPDSTYD MIGGLDQQIK EIKEVIELPI KHPELFESLG IAQPKGVLLY
201: GPPGTGKTLL ARAVAHHTDC TFIRVSGSEL VQKYIGEGSR MVRELFVMAR EHAPSIIFMD EIDSIGSARM ESGTGNGDSE VQRTMLELLN QLDGFEASNK
301: IKVLMATNRI DILDQALLRP GRIDRKIEFP NPNEDSRGDI LKIHSRRMNL MRGIDLKKIA GKMNGASGAE LKAVCTEAGM FALRERRVHV TQEDFEMAVA
401: KVMKKDNEKN MSLRKLWK
101: HPEGKYVVDI DKSIDITKIT PSTRVALRND SYMLHLVLPS KVDPLVNLMK VEKVPDSTYD MIGGLDQQIK EIKEVIELPI KHPELFESLG IAQPKGVLLY
201: GPPGTGKTLL ARAVAHHTDC TFIRVSGSEL VQKYIGEGSR MVRELFVMAR EHAPSIIFMD EIDSIGSARM ESGTGNGDSE VQRTMLELLN QLDGFEASNK
301: IKVLMATNRI DILDQALLRP GRIDRKIEFP NPNEDSRGDI LKIHSRRMNL MRGIDLKKIA GKMNGASGAE LKAVCTEAGM FALRERRVHV TQEDFEMAVA
401: KVMKKDNEKN MSLRKLWK
001: MVRDIEDEIR DEKNPRPLDE DDIALLKTYG LGPYSAPIKK VEKEIKDLAK KINDLCGIKE SDTGLAPPSQ WDLVSDKQMM QEEQPLQVAR CTKIISPNTE
101: DAKYVINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LESRTQIFKI HTRTMNCERD IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDAVNKVI KGYQKFSATP KYMVYN
101: DAKYVINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LESRTQIFKI HTRTMNCERD IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDAVNKVI KGYQKFSATP KYMVYN
Arabidopsis Description
RPT1ARPT1A [Source:UniProtKB/TrEMBL;Acc:A0A178W3N8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.