Factsheet for TraesCS1A01G071300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
mitochondrion 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G308700.1
TraesCS1A01G308800.1
TraesCS1B01G319300.1
TraesCS1D01G308000.1
TraesCS2B01G113800.2
TraesCS3A01G184500.1
TraesCS3A01G191900.1
TraesCS3A01G335000.1
TraesCS3B01G219900.1
TraesCS3B01G365900.1
TraesCS3D01G188600.1
TraesCS3D01G194500.2
TraesCS3D01G328300.1
TraesCS4B01G131100.1
TraesCS4D01G126100.1
TraesCS5A01G057100.1
TraesCS5A01G057200.1
TraesCS5A01G139700.1
TraesCS5B01G059900.1
TraesCS5B01G137100.1
TraesCS5D01G068000.1
TraesCS5D01G068100.1
TraesCS5D01G153400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56690.1	TraesCS1A01G308700.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS1A01G308800.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS1B01G319300.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS1D01G308000.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS2B01G113800.2	AT3G56800.1	11346951
AT3G56690.1	TraesCS3A01G184500.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS3A01G191900.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS3A01G335000.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS3B01G219900.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS3B01G365900.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS3D01G188600.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS3D01G194500.2	AT3G56800.1	11346951
AT3G56690.1	TraesCS3D01G328300.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS4B01G131100.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS4D01G126100.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS5A01G057100.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS5A01G057200.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS5A01G139700.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS5B01G059900.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS5B01G137100.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS5D01G068000.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS5D01G068100.1	AT3G56800.1	11346951
AT3G56690.1	TraesCS5D01G153400.1	AT3G56800.1	11346951

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G089700.1	Wheat	cytosol, plastid	94.73	97.04
TraesCS1D01G073600.1	Wheat	cytosol, plastid	96.72	96.72
HORVU1Hr1G015310.16	Barley	cytosol, plastid	95.22	95.22
TraesCS4A01G204700.1	Wheat	cytosol, plastid	92.24	92.15
EES09632	Sorghum	cytosol, plastid	70.95	72.17
Zm00001d049140_P006	Maize	cytosol, plastid	70.75	70.75
GSMUA_Achr6P29120_001	Banana	cytosol	38.61	64.67
PGSC0003DMT400018483	Potato	cytosol	22.69	55.61
CDX72118	Canola	plastid	43.38	46.19
VIT_08s0040g00910.t01	Wine grape	cytosol	47.66	45.23
Solyc10g078320.1.1	Tomato	nucleus	43.78	44.58
Bra007262.1-P	Field mustard	plastid	42.89	43.98
KRH66707	Soybean	plastid	45.67	43.88
AT3G56690.1	Thale cress	cytosol, plastid	44.38	43.64
CDY56774	Canola	plastid	43.98	43.42
KRG95054	Soybean	plastid	32.34	42.15
TraesCS2A01G355200.1	Wheat	cytosol	23.28	41.27
TraesCS3A01G144500.1	Wheat	cytosol	18.71	35.27
TraesCS1A01G222100.1	Wheat	cytosol	26.97	33.88
TraesCS1A01G190300.1	Wheat	cytosol	26.77	33.29
TraesCS4A01G035700.1	Wheat	plastid	26.77	33.09
TraesCS4A01G035500.1	Wheat	golgi, nucleus	26.67	32.76
TraesCS3A01G145100.1	Wheat	cytosol	25.27	32.19
TraesCS2A01G060000.1	Wheat	cytosol	27.46	31.94
TraesCS1A01G248500.1	Wheat	cytosol	18.91	31.83
TraesCS3A01G145000.1	Wheat	cytosol	21.09	30.46
TraesCS4A01G463300.1	Wheat	mitochondrion	23.68	30.32
TraesCS6A01G162700.2	Wheat	cytosol, golgi	12.04	30.25
TraesCS7A01G025800.1	Wheat	mitochondrion	23.58	30.19
TraesCS7A01G378600.1	Wheat	cytosol	11.84	29.75
TraesCS7A01G156800.1	Wheat	cytosol	12.54	29.58
TraesCS7A01G545700.1	Wheat	cytosol	11.64	29.4
TraesCS3A01G450800.1	Wheat	mitochondrion	21.79	29.36
TraesCS4A01G115000.1	Wheat	cytosol	12.74	28.44
TraesCS3A01G421900.1	Wheat	cytosol	12.24	28.34
TraesCS2A01G090000.1	Wheat	cytosol	12.34	27.62
TraesCS6A01G177600.1	Wheat	cytosol	11.44	27.51
TraesCS2A01G086400.1	Wheat	cytosol	11.34	27.47
TraesCS7A01G372600.1	Wheat	cytosol	11.44	27.19
TraesCS2A01G475900.1	Wheat	cytosol	11.44	26.93
TraesCS2A01G471400.1	Wheat	cytosol	11.84	26.1
TraesCS2A01G457600.3	Wheat	mitochondrion	20.4	21.97
TraesCS7A01G277100.1	Wheat	peroxisome	19.8	18.26
TraesCS5A01G301500.1	Wheat	mitochondrion	19.0	17.75

Protein Annotations

EnsemblPlants:TraesCS1A01G071300.1	EnsemblPlantsGene:TraesCS1A01G071300	Gene3D:1.10.8.60	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:P-loop_NTPase
PANTHER:PTHR23077	PANTHER:PTHR23077:SF27	PFAM:PF00004	ScanProsite:PS00674	SEG:seg	SMART:SM00382
SUPFAM:SSF52540	TIGR:cd00009	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr1A:-:53904252..53910378

Molecular Weight (calculated)

109105.0 Da

IEP (calculated)

5.468

GRAVY (calculated)

-0.227

Length

1005 amino acids

Sequence
(BLAST)

0001: MSSKGKKKKP SASPQPSPRT PPSRAREGTG GCILDLSSTA AAAAARYPAL VPRGGAGCFA GTVSDVVSRG GSRGGEGRLW LAEPAMASTG LRPGCLVFVS
0101: LISSSNNSLD GFPLDSLFEE CNRFFDLDVD NDLISNEAGV NFVTATVFPS REVQKNDIKL SWDLACTLGY PAVGRSLLIS PLYTSQAPKR ADSGEFLRVI
0201: KCSDLYLSLV PTKVVPSSHN KSESDCHPVR NVMVMESPKR IPSTPPCRNE SHDGASNSGF SLCLDQATAK SALADDKISD LLKTSASRWL DGRHLLKGNY
0301: VPLSMCGKLS MFVVLRAETD GSALDVVREK KNSMSSADVS GKLVETPALF LVERTTKVHL SDLSSSKEFG SDKLGFPPEY SICADTASED ANHDQRLGGL
0401: SEVSAKVKEM ISFSLADQIG LPRNGLHDLP RYKGLLLYGP PGTGKTSLAS SCAYDLGANL FTINGPEIIS QYHGESEQTL YDVFTSAKQA APAVIFIDEL
0501: DAIAPARKDG GEELSLRMVA TLLKLMDEIG RNDRVILIAA TNRLESIDRA LLRPGRFDQE IEIGVPSPGQ RLDILHHLLS GVHHSLTSEE VESLAFATHG
0601: FMGADLAALC NEAALSALRR YISVKESSTQ LLGDRDTNAE KTNIQEIDGL LGYEISSLSS SLSKLTMSME DHCWTSRGDT IESSEPDDKK DELLLLVTKE
0701: DFEQAKMKIR PSAMREVMLE LPKVRWEDVG GQARIKKQLI EAIQLPQKCP DAFERLGIRP PRGLLMIGPP GCSKTLMARA VASEAKMNFL AVKGPELFSK
0801: WVGDSEKAVR SLFAKAKDNA PAILFFDEID GLAVTRGHGS NGISVADRVL SQLLQEMDGL DQKIGVTVIA ATNRPDKIDI ALLRPGRFDR LLDVQPPDEA
0901: DREDIFRIHT RSIPCSHDVN LNELARLTEG YTGADIKLVC REAAVAALDE NFDIPEVAIT HFKSAIDRVS PSDMQFYQEL AARFRRLVDD TDNATTPGIR
1001: TEPPI

Best Arabidopsis Sequence Match ( AT3G01610.1 )
(BLAST)

001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE

Arabidopsis Description

CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.