Factsheet for HORVU1Hr1G015310.16

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
mitochondrion 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G001280.1
HORVU2Hr1G016740.4
HORVU3Hr1G038010.1
HORVU3Hr1G079210.4
HORVU4Hr1G026290.3
HORVU5Hr1G014060.1
HORVU5Hr1G014070.2
HORVU5Hr1G044710.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56690.1	HORVU0Hr1G001280.1	AT3G56800.1	11346951
AT3G56690.1	HORVU2Hr1G016740.4	AT3G56800.1	11346951
AT3G56690.1	HORVU3Hr1G038010.1	AT3G56800.1	11346951
AT3G56690.1	HORVU3Hr1G079210.4	AT3G56800.1	11346951
AT3G56690.1	HORVU4Hr1G026290.3	AT3G56800.1	11346951
AT3G56690.1	HORVU5Hr1G014060.1	AT3G56800.1	11346951
AT3G56690.1	HORVU5Hr1G014070.2	AT3G56800.1	11346951
AT3G56690.1	HORVU5Hr1G044710.4	AT3G56800.1	11346951

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G073600.1	Wheat	cytosol, plastid	95.42	95.42
TraesCS1A01G071300.1	Wheat	cytosol, plastid	95.22	95.22
TraesCS1B01G089700.1	Wheat	cytosol, plastid	92.94	95.21
HORVU4Hr1G016200.10	Barley	cytosol, plastid	89.65	89.56
EES09632	Sorghum	cytosol, plastid	71.24	72.47
Zm00001d049140_P006	Maize	cytosol, plastid	71.24	71.24
GSMUA_Achr6P29120_001	Banana	cytosol	38.91	65.17
PGSC0003DMT400018483	Potato	cytosol	22.99	56.34
HORVU3Hr1G029660.1	Barley	cytosol, peroxisome	1.89	55.88
CDX72118	Canola	plastid	43.78	46.61
VIT_08s0040g00910.t01	Wine grape	cytosol	47.56	45.14
Solyc10g078320.1.1	Tomato	nucleus	44.28	45.09
Bra007262.1-P	Field mustard	plastid	43.28	44.39
AT3G56690.1	Thale cress	cytosol, plastid	45.07	44.32
KRH66707	Soybean	plastid	45.87	44.07
CDY56774	Canola	plastid	44.38	43.81
KRG95054	Soybean	plastid	32.44	42.28
HORVU2Hr1G086170.2	Barley	cytosol	22.89	40.42
HORVU5Hr1G069560.1	Barley	cytosol	8.46	40.09
HORVU0Hr1G038060.2	Barley	cytosol	20.9	39.7
HORVU6Hr1G053620.1	Barley	cytosol	13.43	37.6
HORVU3Hr1G067470.2	Barley	cytosol	8.16	36.12
HORVU1Hr1G060370.1	Barley	cytosol	26.97	33.58
HORVU1Hr1G060340.2	Barley	cytosol	26.97	33.33
HORVU1Hr1G049910.1	Barley	cytosol	26.97	33.29
HORVU2Hr1G011690.1	Barley	cytosol	26.97	32.89
HORVU4Hr1G072010.4	Barley	cytosol	26.67	32.88
HORVU0Hr1G006340.1	Barley	cytosol	25.77	32.87
HORVU4Hr1G071960.2	Barley	cytosol	26.57	32.68
HORVU6Hr1G049800.1	Barley	cytosol	1.79	32.14
HORVU3Hr1G029450.1	Barley	cytosol	25.77	32.05
HORVU3Hr1G029440.1	Barley	cytosol	25.77	31.82
HORVU6Hr1G087650.1	Barley	cytosol, plasma membrane	11.74	30.73
HORVU7Hr1G119300.13	Barley	cytosol	11.94	29.85
HORVU6Hr1G083150.1	Barley	cytosol	12.54	29.58
HORVU7Hr1G002880.2	Barley	plastid	23.48	29.46
HORVU2Hr1G107280.1	Barley	cytosol	10.85	29.46
HORVU6Hr1G032570.5	Barley	cytosol	11.84	29.1
HORVU2Hr1G014000.1	Barley	cytosol	11.74	28.78
HORVU7Hr1G032070.1	Barley	cytosol	12.64	28.6
HORVU0Hr1G013350.2	Barley	cytosol	8.76	28.57
HORVU4Hr1G055060.1	Barley	cytosol	12.74	28.44
HORVU2Hr1G014770.2	Barley	cytosol, plastid	12.44	28.34
HORVU7Hr1G090380.3	Barley	cytosol	12.24	28.21
HORVU7Hr1G084550.2	Barley	cytosol	11.74	27.9
HORVU6Hr1G036990.7	Barley	cytosol	11.74	25.54
HORVU2Hr1G104530.9	Barley	cytosol	19.3	21.25
HORVU1Hr1G091080.1	Barley	mitochondrion, plastid	4.68	18.73
HORVU3Hr1G095530.3	Barley	mitochondrion, plastid	4.58	18.33
HORVU7Hr1G058410.7	Barley	cytosol, peroxisome	20.0	18.16
HORVU5Hr1G078590.8	Barley	plastid	20.1	17.88

Protein Annotations

EnsemblPlants:HORVU1Hr1G015310.16	EnsemblPlantsGene:HORVU1Hr1G015310	Gene3D:1.10.8.60	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:P-loop_NTPase
ncoils:Coil	PANTHER:PTHR23077	PANTHER:PTHR23077:SF27	PFAM:PF00004	ScanProsite:PS00674	SEG:seg
SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI000B4611B9	UniProt:A0A287EQ81	MapMan:35.1	:

Description

No Description!

Coordinates

chrchr1H:+:44674714..44682752

Molecular Weight (calculated)

108888.0 Da

IEP (calculated)

5.533

GRAVY (calculated)

-0.213

Length

1005 amino acids

Sequence
(BLAST)

0001: MSSKGKKKKP SASPQPSPRT PPSRTREGTG GCLDLSSTAA AAAARYPALV PCGGAGCFAG TVSNVVSRGG SRGGEGRVWL AEPAMVSSGL RPGCLISVSL
0101: ISSSSNSLDG FPLDSLFEEC NRFFDLDVDD DLISNEAGVN FVTATVFPSR EVQKNDIKLS WDLACTLGYP VVGRSLLISP LYTSQAPKRA DAGELLRVIK
0201: CSNLYLSLVP TKVAPSSHNK SDSDCHPVRN VMVMESPKRI PSTPPCRKES HDGASNSGFS LCLDQATAKS ALADDKINDL LQTSASRWLD GRHLLKGNYV
0301: PLSMCGKLSM FIVLRAETDG SALDVMHEKR NSASNADVSG KLVGTPALFL VDRTTKVHLS DLSSSKEFGS DKPGFPPEYS ICADTGSEDA NHDQRLGGLS
0401: EVSAKVKEMI SFSLADQIGL PRNGLHDLPR YKGLLLYGPP GTGKTSLASS CAYDLGANLF TINGPEIISQ YHGESEQTLY DVFTSAKQAA PAVIFIDELD
0501: AIAPARKDGG EELSLRMVAT LLKLMDEIGR NDRVILIAAT NRLESIDRAL LRPGRFDQEI EIGVPSPGQR LDILHHLLSG VHHSLTSEEV ESLAFATHGF
0601: VGADLAALCN EAALSALRRY ISVKESSTQL LGDRDINAEK TNIQEIDGLL GYEISSLSSS LSKLTMSMED HCWTGRGDII ESNEPDDKKD ELLLLVTKDD
0701: FEQAKMKVRP SAMREVVMLE LPKVRWEDVG GQTRIKKQLI EAIQLPQKCP DAFERLGIRP PRGLLMIGPP GCSKTLMARA VASEAKMNFL AVKGPELFSK
0801: WVGDSEKAVR SLFAKAKENA PAILFFDEID GLAVTRGHGS NGISVADRVL SQLLQEMDGL DQRIGVTVIA ATNRPDKIDI ALLRPGRFDR LLDVQPPDEA
0901: DREDIFRIHT RSIPCSDDVN LNELARLTEG YTGADIKLVC REAAVAALDE SFDIPEVAII HFKSAIDRVS PSDMKFYQEL AARFRRLVDD TDRATTPGMH
1001: TEPAI

Best Arabidopsis Sequence Match ( AT3G01610.1 )
(BLAST)

001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE

Arabidopsis Description

CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.