Factsheet for PGSC0003DMT400018483

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400014123
PGSC0003DMT400018569
PGSC0003DMT400046278
PGSC0003DMT400054299
PGSC0003DMT400058435
PGSC0003DMT400070437
PGSC0003DMT400097662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56690.1	PGSC0003DMT400014123	AT3G56800.1	11346951
AT3G56690.1	PGSC0003DMT400018569	AT3G56800.1	11346951
AT3G56690.1	PGSC0003DMT400046278	AT3G56800.1	11346951
AT3G56690.1	PGSC0003DMT400054299	AT3G56800.1	11346951
AT3G56690.1	PGSC0003DMT400058435	AT3G56800.1	11346951
AT3G56690.1	PGSC0003DMT400070437	AT3G56800.1	11346951
AT3G56690.1	PGSC0003DMT400097662	AT3G56800.1	11346951

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g078320.1.1	Tomato	nucleus	96.34	40.02
GSMUA_Achr6P29120_001	Banana	cytosol	57.32	39.17
PGSC0003DMT400006190	Potato	cytosol	25.37	31.9
PGSC0003DMT400079514	Potato	cytosol	27.56	28.39
CDX72118	Canola	plastid	65.37	28.39
Bra007262.1-P	Field mustard	plastid	67.07	28.06
PGSC0003DMT400023656	Potato	cytosol	29.02	27.8
PGSC0003DMT400012446	Potato	cytosol	28.78	27.51
VIT_08s0040g00910.t01	Wine grape	cytosol	70.98	27.48
CDY56774	Canola	plastid	67.32	27.11
KRH66707	Soybean	plastid	69.02	27.06
AT3G56690.1	Thale cress	cytosol, plastid	67.32	27.01
PGSC0003DMT400063574	Potato	cytosol	26.83	26.0
PGSC0003DMT400053010	Potato	cytosol	25.37	25.18
PGSC0003DMT400078301	Potato	cytosol	25.37	25.12
PGSC0003DMT400040872	Potato	cytosol	27.07	25.0
PGSC0003DMT400051744	Potato	cytosol	26.83	24.77
PGSC0003DMT400072919	Potato	cytosol	35.37	23.73
TraesCS4B01G108300.1	Wheat	plastid	56.59	23.2
EES09632	Sorghum	cytosol, plastid	55.85	23.18
Zm00001d049140_P006	Maize	cytosol, plastid	56.34	22.99
HORVU1Hr1G015310.16	Barley	cytosol, plastid	56.34	22.99
TraesCS1D01G073600.1	Wheat	cytosol, plastid	56.1	22.89
HORVU4Hr1G016200.10	Barley	cytosol, plastid	56.1	22.86
TraesCS4A01G204700.1	Wheat	cytosol, plastid	55.85	22.76
TraesCS1A01G071300.1	Wheat	cytosol, plastid	55.61	22.69
PGSC0003DMT400038718	Potato	cytosol	23.9	22.63
TraesCS1B01G089700.1	Wheat	cytosol, plastid	54.15	22.63
TraesCS4D01G105500.2	Wheat	cytosol, plastid	54.88	22.37
PGSC0003DMT400031321	Potato	cytosol	39.02	19.88
PGSC0003DMT400050662	Potato	cytosol	38.78	19.75
PGSC0003DMT400055513	Potato	cytosol	38.54	19.58
PGSC0003DMT400027096	Potato	cytosol	38.29	19.43
PGSC0003DMT400046624	Potato	cytosol	37.56	19.01
PGSC0003DMT400015455	Potato	mitochondrion	33.66	18.09
PGSC0003DMT400046254	Potato	cytosol	35.85	17.88
KRG95054	Soybean	plastid	33.17	17.64
PGSC0003DMT400013679	Potato	cytosol	33.41	14.73

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005516
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0016020	UniProt:M1AAQ2	InterPro:P-loop_NTPase
PFAM:PF00004	EnsemblPlantsGene:PGSC0003DMG401007173	PGSC:PGSC0003DMG401007173	EnsemblPlants:PGSC0003DMT400018483	ScanProsite:PS00674	PANTHER:PTHR23077
PANTHER:PTHR23077:SF27	SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI0002948AF3	SEG:seg	:

Description

Calmodulin-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG401007173]

Coordinates

chr10:+:59421966..59427679

Molecular Weight (calculated)

45432.3 Da

IEP (calculated)

6.102

GRAVY (calculated)

-0.256

Length

410 amino acids

Sequence
(BLAST)

001: MEHALLDKDV HDLATATHGF VGADLAALCN EAALNCLREH VESKTCFGNT QYKPSMPRYD ACLGRNGTHC LQDISFNSDF EGASSSISEA CISSDILRNF
101: TRMAQTDTLR ITYKDFERAR MKIRPSAMRE VILEVPKVNW DDVGGQREVK MQLIEAVEWP QKHQEAFKRI GTRPPTGVLL FGPPGCSKTL LARAVASEAG
201: LNFLAVKGPE LYSKWVGESE KAVRTLFAKA RTNSPSIIFF DEIDGLAVVR GKESDGVSVS DRVMSQLLIE LDGLHQRVNV TVIAATNRPD KIDPALLRPG
301: RFDRLLYVGP PDEKDREAIF HIHLKKMPCS SDICIEELAQ LTSGCTGADI SLICREAAIA AIEESLDASE ITMEHLKAAI RQVPPSEVHS YQELSNRFQR
401: LVHSDPVKND

Best Arabidopsis Sequence Match ( AT3G56690.1 )
(BLAST)

0001: MPSKKKQSRT PSRLSNSEPP ASPRTPASST TSRDTDSINE EELRRSIEEA SAAFPCLLGK SAIIARVADV ASESIRGSKI WLSETSMVAA SLSPGSTVSV
0101: SLASPESRFS RSFPLSSIKA EYGDDSESII ADEPGNYFVL TTVFSSSKVF KDAVRISLNL CYGLGCPVSG RTVFVYPVSG PSLSDQFNGN GRSRYDDVNH
0201: LSLLACKELC LELTPFRNML QAKNAFESSY EQNGNGNSTP KTPANLQKFS SPRPKSPVSP IIEDSVFSCK QRFSSESSID LREVLSNESS KKLLQICASS
0301: WLYPCSLLYG NFVSVPILSE ICIFCVKRAD KRPSDTSNRN HAFMINQETK VYLHHTLDLA SEIQGRTFVQ GLQFDEGENV GCEISKLGGL SKEYAILRDI
0401: IDSSSIKNSL SSLGLRPTKG VLIHGPPGTG KTSLARTFAR HSGVNFFSVN GPEIISQYLG ESEKALDEVF RSASNATPAV VFIDDLDAIA PARKEGGEEL
0501: SQRMVATLLN LMDGISRTDG VVVIAATNRP DSIEPALRRP GRLDREIEIG VPSSTQRSDI LHIILRGMRH SLSNIQVEQL AMATHGFVGA DLSALCCEAA
0601: FVCLRRHLDQ SSSSSNLPLE EAPIAESSSN MSDISSDSSD SASSCITISA TTSGAQRSFS LDETVSLVAD DIQNNGNSCS EQMLRKQGEH TLSVGFEDFE
0701: NAKTKIRPSA MREVILEVPK VNWEDVGGQN EVKNQLMEAV EWPQKHQDAF KRIGTRPPSG ILMFGPPGCS KTLMARAVAS EAKLNFLAVK GPELFSKWVG
0801: ESEKAVRSLF AKARANAPSI IFFDEIDSLA SIRGKENDGV SVSDRVMSQL LVELDGLHQR VGVTVIAATN RPDKIDSALL RPGRFDRLLY VGPPNETDRE
0901: AILKIHLRKI PCSSDICLKE LASITKGYTG ADISLICREA AIAALEESLE MEEISMRHLK AAISQIEPTE ILSYKALSEK FQRLVHTDPQ REEEVTQPGN
1001: KSRSLWTPLR SVAMFLRRHI AS

Arabidopsis Description

CIP111Calmodulin-interacting protein 111 [Source:UniProtKB/Swiss-Prot;Acc:Q9LET7]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.