Factsheet for PGSC0003DMT400063574

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400004851
PGSC0003DMT400033754
PGSC0003DMT400058223

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G05530.1	PGSC0003DMT400004851	AT1G59900.1	24846764
AT3G05530.1	PGSC0003DMT400058223	AT1G59900.1	24846764
AT3G05530.1	PGSC0003DMT400033754	AT3G25860.1	24846764

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g099760.2.1	Tomato	nucleus, plastid	100.0	100.0
VIT_14s0060g02260.t01	Wine grape	cytosol	92.2	96.3
GSMUA_Achr9P13230_001	Banana	cytosol	92.2	96.3
GSMUA_Achr5P04520_001	Banana	cytosol	91.49	95.56
KRG92899	Soybean	cytosol, nucleus	95.51	95.51
VIT_05s0020g01180.t01	Wine grape	cytosol	95.27	95.27
KRH33891	Soybean	endoplasmic reticulum, nucleus	95.27	95.27
HORVU6Hr1G087650.1	Barley	cytosol, plasma membrane	86.29	95.05
Bra001152.1-P	Field mustard	cytosol	95.04	94.81
CDX74142	Canola	cytosol	95.04	94.81
CDY40714	Canola	cytosol	95.04	94.81
CDY27761	Canola	cytosol	94.8	94.58
AT3G05530.1	Thale cress	cytosol	94.8	94.58
Bra039431.1-P	Field mustard	cytosol	94.8	94.58
CDY05176	Canola	cytosol	94.8	94.58
Bra040214.1-P	Field mustard	cytosol	94.56	94.34
CDY18801	Canola	cytosol	94.56	94.34
CDY18782	Canola	cytosol	94.56	94.34
Zm00001d037481_P003	Maize	cytosol, extracellular, plasma membrane	94.09	92.56
Os06t0173100-01	Rice	cytosol, nucleus, plasma membrane	93.85	92.54
EER87942	Sorghum	cytosol	93.85	92.33
KXG31298	Sorghum	cytosol	93.14	92.06
Zm00001d045163_P001	Maize	mitochondrion	38.3	92.05
Os02t0803700-01	Rice	cytosol, nucleus, plastid	92.67	91.38
KRH68501	Soybean	nucleus	90.07	89.65
TraesCS3B01G457100.1	Wheat	cytosol, golgi	91.73	89.4
TraesCS3A01G421900.1	Wheat	cytosol	91.73	89.4
TraesCS3D01G417000.1	Wheat	cytosol	91.49	89.17
TraesCS7B01G036400.1	Wheat	cytosol	89.6	88.76
TraesCS7D01G134800.1	Wheat	cytosol	89.36	88.11
Zm00001d018409_P007	Maize	cytosol	90.78	85.71
KRG96790	Soybean	mitochondrion	66.19	84.34
PGSC0003DMT400006190	Potato	cytosol	34.04	44.17
PGSC0003DMT400051744	Potato	cytosol	41.13	39.19
PGSC0003DMT400023656	Potato	cytosol	39.48	39.02
PGSC0003DMT400040872	Potato	cytosol	40.9	38.96
PGSC0003DMT400079514	Potato	cytosol	36.64	38.94
PGSC0003DMT400012446	Potato	cytosol	39.24	38.69
PGSC0003DMT400053010	Potato	cytosol	36.88	37.77
PGSC0003DMT400078301	Potato	cytosol	36.88	37.68
PGSC0003DMT400038718	Potato	cytosol	33.81	33.03
PGSC0003DMT400018483	Potato	cytosol	26.0	26.83
PGSC0003DMT400072919	Potato	cytosol	28.37	19.64
PGSC0003DMT400046624	Potato	cytosol	30.02	15.68
PGSC0003DMT400031321	Potato	cytosol	29.31	15.4
PGSC0003DMT400055513	Potato	cytosol	29.31	15.37
PGSC0003DMT400050662	Potato	cytosol	29.08	15.28
PGSC0003DMT400027096	Potato	cytosol	29.08	15.22
PGSC0003DMT400015455	Potato	mitochondrion	25.53	14.15
PGSC0003DMT400046254	Potato	cytosol	24.82	12.77
PGSC0003DMT400013679	Potato	cytosol	24.82	11.29

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:102580368	MapMan:19.2.6.2.1.5	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300
InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ncoils:Coil	GO:GO:0000166	GO:GO:0000502
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009553	GO:GO:0009555	GO:GO:0009987	GO:GO:0010498
GO:GO:0016787	GO:GO:0019538	GO:GO:0030163	GO:GO:0036402	GO:GO:1901800	UniProt:M1CAU1
InterPro:P-loop_NTPase	PFAM:PF00004	EnsemblPlantsGene:PGSC0003DMG400024715	PGSC:PGSC0003DMG400024715	EnsemblPlants:PGSC0003DMT400063574	ScanProsite:PS00674
InterPro:PSMC3	PANTHER:PTHR23073	PANTHER:PTHR23073:SF7	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01242
UniParc:UPI0002768F6A	RefSeq:XP_006344679.1	SEG:seg	:	:	:

Description

26S protease regulatory subunit 6A homolog [Source:PGSC_GENE;Acc:PGSC0003DMG400024715]

Coordinates

chr1:+:77468635..77474656

Molecular Weight (calculated)

47484.8 Da

IEP (calculated)

4.645

GRAVY (calculated)

-0.433

Length

423 amino acids

Sequence
(BLAST)

001: MATPMAEDSN FEDDQLHAMS TEDIIRASRL LDNEIRIIKE ELQRTNLELD SFKEKIKENQ EKIKLNKQLP YLVGNIVEIL EMNPEEEAEE DGANIDLDSQ
101: RKGKCVVLKT STRQTIFLPV VGLVDPDNLK PGDLVGVNKD SYLILDTLPS EYDSRVKAME VDEKPTEDYN DIGGLEKQIQ ELVEAIVLPM THQERFQKLG
201: VRPPKGVLLY GPPGTGKTLM ARACAAQTNA TFLKLAGPQL VQMFIGDGAK LVRDAFQLAK EKSPCIIFID EIDAIGTKRF DSEVSGDREV QRTMLELLNQ
301: LDGFSSDDRI KVIAATNRAD ILDPALMRSG RLDRKIEFPH PTEEARARIL QIHSRKMNVN PDVNFEELAR STDDFNGAQL KAVCVEAGML ALRRDATEVT
401: HEDFNEGIIQ VQAKKKASLN YYA

Best Arabidopsis Sequence Match ( AT3G05530.1 )
(BLAST)

001: MATPMVEDTS SFEEDQLASM STEDITRATR LLDNEIRILK EDAQRTNLEC DSYKEKIKEN QEKIKLNKQL PYLVGNIVEI LEMNPEDDAE EDGANIDLDS
101: QRKGKCVVLK TSTRQTIFLP VVGLVDPDSL KPGDLVGVNK DSYLILDTLP SEYDSRVKAM EVDEKPTEDY NDIGGLEKQI QELVEAIVLP MTHKERFEKL
201: GVRPPKGVLL YGPPGTGKTL MARACAAQTN ATFLKLAGPQ LVQMFIGDGA KLVRDAFQLA KEKAPCIIFI DEIDAIGTKR FDSEVSGDRE VQRTMLELLN
301: QLDGFSSDER IKVIAATNRA DILDPALMRS GRLDRKIEFP HPTEEARARI LQIHSRKMNV HPDVNFEELA RSTDDFNGAQ LKAVCVEAGM LALRRDATEV
401: NHEDFNEGII QVQAKKKASL NYYA

Arabidopsis Description

RPT5A26S proteasome regulatory subunit 6A homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9SEI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.