CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92899	Soybean	cytosol, nucleus	99.76	99.76
GSMUA_Achr9P13230_001	Banana	cytosol	93.14	97.28
HORVU6Hr1G087650.1	Barley	cytosol, plasma membrane	87.0	95.83
GSMUA_Achr5P04520_001	Banana	cytosol	91.73	95.8
PGSC0003DMT400063574	Potato	cytosol	95.27	95.27
Solyc01g099760.2.1	Tomato	nucleus, plastid	95.27	95.27
Bra039431.1-P	Field mustard	cytosol	95.04	94.81
CDY27761	Canola	cytosol	95.04	94.81
CDY05176	Canola	cytosol	95.04	94.81
CDY40714	Canola	cytosol	94.8	94.58
CDY18801	Canola	cytosol	94.8	94.58
CDY18782	Canola	cytosol	94.8	94.58
CDX74142	Canola	cytosol	94.8	94.58
Bra001152.1-P	Field mustard	cytosol	94.8	94.58
Bra040214.1-P	Field mustard	cytosol	94.8	94.58
Os06t0173100-01	Rice	cytosol, nucleus, plasma membrane	94.8	93.47
Zm00001d037481_P003	Maize	cytosol, extracellular, plasma membrane	94.56	93.02
KRH68501	Soybean	nucleus	93.38	92.94
EER87942	Sorghum	cytosol	94.33	92.79
Os02t0803700-01	Rice	cytosol, nucleus, plastid	94.09	92.77
KXG31298	Sorghum	cytosol	93.62	92.52
Zm00001d045163_P001	Maize	mitochondrion	38.06	91.48
TraesCS3B01G457100.1	Wheat	cytosol, golgi	92.44	90.09
TraesCS3A01G421900.1	Wheat	cytosol	92.44	90.09
TraesCS7B01G036400.1	Wheat	cytosol	90.78	89.93
TraesCS3D01G417000.1	Wheat	cytosol	92.2	89.86
TraesCS7D01G134800.1	Wheat	cytosol	90.54	89.28
KRG96790	Soybean	mitochondrion	68.32	87.05
Zm00001d018409_P007	Maize	cytosol	91.49	86.38
KRH19693	Soybean	cytosol	42.32	40.41
KRH32292	Soybean	cytosol, nucleus	42.32	40.41
KRH46990	Soybean	nucleus	39.72	40.19
KRH44668	Soybean	cytosol, mitochondrion, nucleus	39.72	40.19
KRH67524	Soybean	nucleus	42.08	39.91
KRG95799	Soybean	cytosol, nucleus	42.08	39.91
KRH61120	Soybean	endoplasmic reticulum	37.35	39.7
KRH51796	Soybean	cytosol	37.35	39.7
KRH15139	Soybean	cytosol, endoplasmic reticulum, nucleus	37.12	39.35
KRH05868	Soybean	cytosol, nucleus	37.12	39.35
KRG97280	Soybean	cytosol, nucleus	39.24	38.97
KRH69005	Soybean	nucleus	39.24	38.97
KRH47728	Soybean	cytosol, nucleus	39.24	38.97
KRH06311	Soybean	cytosol	39.24	38.97
KRH30674	Soybean	cytosol, nucleus	36.88	37.77
KRG98107	Soybean	cytosol	37.59	37.68
KRH30673	Soybean	cytosol, nucleus	37.59	37.59
KRH06953	Soybean	cytosol	23.88	37.41
KRH45565	Soybean	endoplasmic reticulum	17.97	37.25
KRH51488	Soybean	mitochondrion	32.62	32.62
KRH00031	Soybean	plastid	25.77	31.59
KRG99061	Soybean	cytosol	14.42	30.5
KRG94277	Soybean	cytosol	12.77	26.09
KRH45638	Soybean	cytosol	14.89	19.63
KRH70928	Soybean	cytosol	27.19	18.98
KRH25081	Soybean	cytosol, endoplasmic reticulum, mitochondrion	28.13	16.44
KRH67721	Soybean	endoplasmic reticulum, nucleus	30.73	16.09
KRG96011	Soybean	endoplasmic reticulum, mitochondrion, nucleus	30.5	15.97
KRH19916	Soybean	endoplasmic reticulum, mitochondrion	30.26	15.78
KRH32530	Soybean	endoplasmic reticulum, mitochondrion	30.26	15.74
KRH26511	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	30.02	15.74
KRH54357	Soybean	cytosol, endoplasmic reticulum, mitochondrion	30.26	15.72
KRH22853	Soybean	cytosol, endoplasmic reticulum, mitochondrion	29.79	15.61
KRH63585	Soybean	endoplasmic reticulum	30.02	15.6
KRH30601	Soybean	cytosol	29.31	15.38
KRH10420	Soybean	mitochondrion	17.02	14.55
KRH44049	Soybean	nucleus	26.95	14.41
KRG96401	Soybean	mitochondrion	26.48	12.19
KRH66707	Soybean	plastid	29.08	11.76
KRH68139	Soybean	cytosol	17.49	11.04
KRH50491	Soybean	cytosol	23.88	8.94
KRG95054	Soybean	plastid	15.6	8.56

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.5	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
EMBL:ACUP02006564	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ncoils:Coil	EnsemblPlantsGene:GLYMA_10G151900	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008540	GO:GO:0009056	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0017025	GO:GO:0019538	GO:GO:0030163
GO:GO:0030433	GO:GO:0031595	GO:GO:0031597	GO:GO:0036402	GO:GO:0045899	GO:GO:1901800
UniProt:I1LBA2	EnsemblPlants:KRH33891	ProteinID:KRH33891	ProteinID:KRH33891.1	InterPro:P-loop_NTPase	PFAM:PF00004
ScanProsite:PS00674	InterPro:PSMC3	PANTHER:PTHR23073	PANTHER:PTHR23073:SF7	SMART:SM00382	SUPFAM:SSF52540
TIGRFAMs:TIGR01242	UniParc:UPI000233C943	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:38667911..38671432

Molecular Weight (calculated)

47443.8 Da

IEP (calculated)

4.720

GRAVY (calculated)

-0.435

Length

423 amino acids

Sequence
(BLAST)

001: MASAMVEDAN FEDDQLANMT TDDVVRASRL LDNEIRILKE ELQRTNLELE SYKDKIKENQ EKIKLNKQLP YLVGNIVEIL EMNPEDEAEE DGANIDLDSQ
101: RKGKCVVLKT STRQTIFLPV VGLVDPDKLK PGDLVGVNKD SYLILDTLPS EYDSRVKAME VDEKPTEDYN DIGGLEKQIQ ELVEAIVLPM THKERFQKLG
201: VRPPKGVLLY GPPGTGKTLM ARACAAQTNA TFLKLAGPQL VQMFIGDGAK LVRDAFQLAK EKSPCIIFID EIDAIGTKRF DSEVSGDREV QRTMLELLNQ
301: LDGFSSDDRI KVIAATNRAD ILDPALMRSG RLDRKIEFPH PSEEARARIL QIHSRKMNVH PDVNFEELAR STDDFNGAQL KAVCVEAGML ALRRDATEVN
401: HEDFNEGIIQ VQAKKKASLN YYA

Best Arabidopsis Sequence Match ( AT3G05530.1 )
(BLAST)

001: MATPMVEDTS SFEEDQLASM STEDITRATR LLDNEIRILK EDAQRTNLEC DSYKEKIKEN QEKIKLNKQL PYLVGNIVEI LEMNPEDDAE EDGANIDLDS
101: QRKGKCVVLK TSTRQTIFLP VVGLVDPDSL KPGDLVGVNK DSYLILDTLP SEYDSRVKAM EVDEKPTEDY NDIGGLEKQI QELVEAIVLP MTHKERFEKL
201: GVRPPKGVLL YGPPGTGKTL MARACAAQTN ATFLKLAGPQ LVQMFIGDGA KLVRDAFQLA KEKAPCIIFI DEIDAIGTKR FDSEVSGDRE VQRTMLELLN
301: QLDGFSSDER IKVIAATNRA DILDPALMRS GRLDRKIEFP HPTEEARARI LQIHSRKMNV HPDVNFEELA RSTDDFNGAQ LKAVCVEAGM LALRRDATEV
401: NHEDFNEGII QVQAKKKASL NYYA

Arabidopsis Description

RPT5A26S proteasome regulatory subunit 6A homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9SEI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.