CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95283
KRG99219
KRH45768
KRH69435
KRH74712

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09100.1	KRG95283	AT1G59900.1	24846764
AT1G09100.1	KRG99219	AT1G59900.1	24846764
AT1G09100.1	KRH45768	AT1G59900.1	24846764
AT1G09100.1	KRH69435	AT1G59900.1	24846764
AT1G09100.1	KRH74712	AT1G59900.1	24846764

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33891	Soybean	endoplasmic reticulum, nucleus	92.94	93.38
KRG92899	Soybean	cytosol, nucleus	92.71	93.14
GSMUA_Achr9P13230_001	Banana	cytosol	88.24	92.59
HORVU6Hr1G087650.1	Barley	cytosol, plasma membrane	82.82	91.67
VIT_05s0020g01180.t01	Wine grape	cytosol	91.06	91.49
GSMUA_Achr5P04520_001	Banana	cytosol	86.59	90.86
Bra040214.1-P	Field mustard	cytosol	90.59	90.8
CDY18782	Canola	cytosol	90.59	90.8
CDY18801	Canola	cytosol	90.59	90.8
Bra039431.1-P	Field mustard	cytosol	90.35	90.57
CDY05176	Canola	cytosol	90.35	90.57
CDY27761	Canola	cytosol	90.35	90.57
CDY40714	Canola	cytosol	90.12	90.33
CDX74142	Canola	cytosol	90.12	90.33
Bra001152.1-P	Field mustard	cytosol	90.12	90.33
AT1G09100.1	Thale cress	cytosol	89.65	90.07
Solyc01g099760.2.1	Tomato	nucleus, plastid	89.65	90.07
PGSC0003DMT400063574	Potato	cytosol	89.65	90.07
Zm00001d045163_P001	Maize	mitochondrion	36.94	89.2
Os06t0173100-01	Rice	cytosol, nucleus, plasma membrane	89.18	88.34
Os02t0803700-01	Rice	cytosol, nucleus, plastid	88.94	88.11
Zm00001d037481_P003	Maize	cytosol, extracellular, plasma membrane	88.94	87.91
KXG31298	Sorghum	cytosol	88.47	87.85
EER87942	Sorghum	cytosol	88.71	87.67
KRG96790	Soybean	mitochondrion	68.47	87.65
TraesCS3A01G421900.1	Wheat	cytosol	87.06	85.25
TraesCS3B01G457100.1	Wheat	cytosol, golgi	87.06	85.25
TraesCS7B01G036400.1	Wheat	cytosol	85.65	85.25
TraesCS3D01G417000.1	Wheat	cytosol	86.82	85.02
TraesCS7D01G134800.1	Wheat	cytosol	84.94	84.15
Zm00001d018409_P007	Maize	cytosol	86.35	81.92
KRH32292	Soybean	cytosol, nucleus	40.94	39.28
KRH19693	Soybean	cytosol	40.94	39.28
KRH46990	Soybean	nucleus	38.59	39.23
KRH44668	Soybean	cytosol, mitochondrion, nucleus	38.59	39.23
KRG95799	Soybean	cytosol, nucleus	40.71	38.79
KRH67524	Soybean	nucleus	40.71	38.79
KRH61120	Soybean	endoplasmic reticulum	36.24	38.69
KRH51796	Soybean	cytosol	36.24	38.69
KRH15139	Soybean	cytosol, endoplasmic reticulum, nucleus	36.0	38.35
KRH05868	Soybean	cytosol, nucleus	36.0	38.35
KRH69005	Soybean	nucleus	37.88	37.79
KRG97280	Soybean	cytosol, nucleus	37.88	37.79
KRH47728	Soybean	cytosol, nucleus	37.88	37.79
KRH06311	Soybean	cytosol	37.88	37.79
KRH45565	Soybean	endoplasmic reticulum	17.88	37.25
KRH30674	Soybean	cytosol, nucleus	35.53	36.56
KRG98107	Soybean	cytosol	35.76	36.02
KRH30673	Soybean	cytosol, nucleus	35.76	35.93
KRH06953	Soybean	cytosol	22.82	35.93
KRH51488	Soybean	mitochondrion	31.53	31.68
KRH00031	Soybean	plastid	24.94	30.72
KRG99061	Soybean	cytosol	13.65	29.0
KRG94277	Soybean	cytosol	12.0	24.64
KRH45638	Soybean	cytosol	14.35	19.0
KRH70928	Soybean	cytosol	26.35	18.48
KRH25081	Soybean	cytosol, endoplasmic reticulum, mitochondrion	26.82	15.75
KRH67721	Soybean	endoplasmic reticulum, nucleus	29.41	15.47
KRG96011	Soybean	endoplasmic reticulum, mitochondrion, nucleus	29.18	15.35
KRH19916	Soybean	endoplasmic reticulum, mitochondrion	28.94	15.17
KRH32530	Soybean	endoplasmic reticulum, mitochondrion	28.94	15.13
KRH26511	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	28.71	15.12
KRH22853	Soybean	cytosol, endoplasmic reticulum, mitochondrion	28.47	14.99
KRH54357	Soybean	cytosol, endoplasmic reticulum, mitochondrion	28.71	14.99
KRH63585	Soybean	endoplasmic reticulum	28.71	14.99
KRH30601	Soybean	cytosol	28.0	14.76
KRH44049	Soybean	nucleus	26.82	14.41
KRH10420	Soybean	mitochondrion	16.71	14.34
KRG96401	Soybean	mitochondrion	25.65	11.86
KRH66707	Soybean	plastid	28.71	11.66
KRH68139	Soybean	cytosol	16.47	10.45
KRH50491	Soybean	cytosol	23.53	8.85
KRG95054	Soybean	plastid	15.76	8.69

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100807867	MapMan:19.2.6.2.1.5	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300
InterPro:AAA+_ATPase	EMBL:ACUP02002119	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ncoils:Coil	EnsemblPlantsGene:GLYMA_03G235200
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008540	GO:GO:0009056
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0017025	GO:GO:0019538
GO:GO:0030163	GO:GO:0030433	GO:GO:0031595	GO:GO:0031597	GO:GO:0036402	GO:GO:0045899
GO:GO:1901800	UniProt:I1JRA0	EnsemblPlants:KRH68501	ProteinID:KRH68501	ProteinID:KRH68501.1	InterPro:P-loop_NTPase
PFAM:PF00004	ScanProsite:PS00674	InterPro:PSMC3	PANTHER:PTHR23073	PANTHER:PTHR23073:SF7	SMART:SM00382
SUPFAM:SSF52540	TIGRFAMs:TIGR01242	UniParc:UPI000233A1B0	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:43551386..43556449

Molecular Weight (calculated)

47408.7 Da

IEP (calculated)

4.754

GRAVY (calculated)

-0.394

Length

425 amino acids

Sequence
(BLAST)

001: MASAMLGDAT TSFEDGKLAS MTTDDVVRAS RILENDIRIL KEEVQRSNRE WESYKEKIQD NEEKVKLNKQ LPYLVGNIVE ILEINPEDEA EEDGSNIDLD
101: SQRKGKCVVL KTSTRQTIFL PVVGLVDPAK LKPGDLVGVN KDSYLVLDAL PSEYDSRVKA MEVDEKPTED YNDIGGLEKQ IQELVEAIVL PMTCKERFQK
201: LGVRPPKGVL LYGPPGTGKT LIARACAAQT NATFLKLAGP QLVQMFIGDG AKLVQDAFQL AKEKSPCIIF IDEIDAIGTK RFDSEVSGDR EVQRTMLELL
301: NQLDGFSSDD RIKVIAATNR ADILDPALMR SGRLDRKIEF PHPTEEARAR ILQIHSRKMN VHPDVNFEEL ARSTDDFNAA QLKAVCVEAG MLALRRDATE
401: VNHEDFNEGI IQVQAKKKAS LNYYA

Best Arabidopsis Sequence Match ( AT3G05530.1 )
(BLAST)

001: MATPMVEDTS SFEEDQLASM STEDITRATR LLDNEIRILK EDAQRTNLEC DSYKEKIKEN QEKIKLNKQL PYLVGNIVEI LEMNPEDDAE EDGANIDLDS
101: QRKGKCVVLK TSTRQTIFLP VVGLVDPDSL KPGDLVGVNK DSYLILDTLP SEYDSRVKAM EVDEKPTEDY NDIGGLEKQI QELVEAIVLP MTHKERFEKL
201: GVRPPKGVLL YGPPGTGKTL MARACAAQTN ATFLKLAGPQ LVQMFIGDGA KLVRDAFQLA KEKAPCIIFI DEIDAIGTKR FDSEVSGDRE VQRTMLELLN
301: QLDGFSSDER IKVIAATNRA DILDPALMRS GRLDRKIEFP HPTEEARARI LQIHSRKMNV HPDVNFEELA RSTDDFNGAQ LKAVCVEAGM LALRRDATEV
401: NHEDFNEGII QVQAKKKASL NYYA

Arabidopsis Description

RPT5A26S proteasome regulatory subunit 6A homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9SEI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.