CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 27291164

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97280	Soybean	cytosol, nucleus	99.53	99.53
KRH47728	Soybean	cytosol, nucleus	99.3	99.3
KRH06311	Soybean	cytosol	99.3	99.3
GSMUA_AchrUn_...	Banana	cytosol	97.89	98.12
VIT_09s0002g00170.t01	Wine grape	cytosol	97.89	97.89
PGSC0003DMT400023656	Potato	cytosol	97.89	97.43
GSMUA_Achr8P16830_001	Banana	cytosol	97.18	97.41
Solyc03g123730.2.1	Tomato	nucleus	97.65	97.2
EES07646	Sorghum	cytosol	97.18	97.18
Os06t0192600-01	Rice	cytosol, nucleus, plasma membrane, plastid	97.18	97.18
Zm00001d018309_P003	Maize	cytosol	97.18	97.18
EES01223	Sorghum	cytosol	96.95	96.95
PGSC0003DMT400012446	Potato	cytosol	97.42	96.74
TraesCS7D01G157200.1	Wheat	cytosol	96.71	96.71
TraesCS7B01G060900.1	Wheat	golgi	96.71	96.71
TraesCS7A01G156800.1	Wheat	cytosol	96.71	96.71
TraesCSU01G080700.1	Wheat	cytosol	95.77	95.77
TraesCS6D01G326400.1	Wheat	cytosol	95.77	95.77
TraesCS6B01G376500.1	Wheat	golgi	95.77	95.77
HORVU6Hr1G083150.1	Barley	cytosol	95.77	95.77
HORVU7Hr1G032070.1	Barley	cytosol	96.01	92.12
Zm00001d052078_P003	Maize	cytosol	97.18	90.59
KRH06953	Soybean	cytosol	48.59	76.67
KRH46990	Soybean	nucleus	44.6	45.45
KRH44668	Soybean	cytosol, mitochondrion, nucleus	44.37	45.22
KRH61120	Soybean	endoplasmic reticulum	38.73	41.46
KRH51796	Soybean	cytosol	38.73	41.46
KRH05868	Soybean	cytosol, nucleus	38.5	41.1
KRH15139	Soybean	cytosol, endoplasmic reticulum, nucleus	38.26	40.85
KRG92899	Soybean	cytosol, nucleus	38.97	39.24
KRH33891	Soybean	endoplasmic reticulum, nucleus	38.97	39.24
KRH30674	Soybean	cytosol, nucleus	37.09	38.26
KRH68501	Soybean	nucleus	37.79	37.88
KRG98107	Soybean	cytosol	37.09	37.44
KRH32292	Soybean	cytosol, nucleus	38.73	37.25
KRH19693	Soybean	cytosol	38.73	37.25
KRG95799	Soybean	cytosol, nucleus	38.97	37.22
KRH67524	Soybean	nucleus	38.97	37.22
KRH30673	Soybean	cytosol, nucleus	36.85	37.12
KRH45565	Soybean	endoplasmic reticulum	17.14	35.78
KRH51488	Soybean	mitochondrion	35.21	35.46
KRG96790	Soybean	mitochondrion	27.23	34.94
KRG99061	Soybean	cytosol	15.49	33.0
KRH00031	Soybean	plastid	23.47	28.99
KRG94277	Soybean	cytosol	13.38	27.54
KRH45638	Soybean	cytosol	16.9	22.43
KRH70928	Soybean	cytosol	26.76	18.81
KRH25081	Soybean	cytosol, endoplasmic reticulum, mitochondrion	30.28	17.82
KRG96011	Soybean	endoplasmic reticulum, mitochondrion, nucleus	33.33	17.57
KRH67721	Soybean	endoplasmic reticulum, nucleus	33.33	17.57
KRH19916	Soybean	endoplasmic reticulum, mitochondrion	33.33	17.51
KRH26511	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	33.1	17.47
KRH22853	Soybean	cytosol, endoplasmic reticulum, mitochondrion	33.1	17.47
KRH32530	Soybean	endoplasmic reticulum, mitochondrion	33.33	17.47
KRH54357	Soybean	cytosol, endoplasmic reticulum, mitochondrion	33.33	17.44
KRH63585	Soybean	endoplasmic reticulum	33.33	17.44
KRH30601	Soybean	cytosol	32.86	17.37
KRH44049	Soybean	nucleus	27.93	15.04
KRH10420	Soybean	mitochondrion	17.14	14.75
KRH66707	Soybean	plastid	31.69	12.91
KRG96401	Soybean	mitochondrion	27.7	12.84
KRH68139	Soybean	cytosol	19.25	12.24
KRG95054	Soybean	plastid	16.67	9.21
KRH50491	Soybean	cytosol	23.94	9.03

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.1	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
EMBL:ACUP02002129	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ncoils:Coil	EnsemblPlantsGene:GLYMA_03G262800	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008540	GO:GO:0009056	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0017025	GO:GO:0019538	GO:GO:0030163
GO:GO:0030433	GO:GO:0031595	GO:GO:0031597	GO:GO:0036402	GO:GO:0045899	GO:GO:1901800
UniProt:I1JS66	EnsemblPlants:KRH69005	ProteinID:KRH69005	ProteinID:KRH69005.1	InterPro:P-loop_NTPase	PFAM:PF00004
ScanProsite:PS00674	PANTHER:PTHR23073	PANTHER:PTHR23073:SF60	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01242
UniParc:UPI000233A7C7	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:45615949..45620341

Molecular Weight (calculated)

47749.8 Da

IEP (calculated)

6.344

GRAVY (calculated)

-0.431

Length

426 amino acids

Sequence
(BLAST)

001: MATEHEDDFK DEKNPRPLDE DDIALLKTYG LGPYSTSIKK AEKEIKEMAK KVNDLCGIKE SDTGLAAPSQ WDLVSDKQMM QEEQPLQVAR CTKIINPNSE
101: DAKYVINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LESRTQIFKI HTRTMNCERD IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDAVNKVI KGYQKFSATP KYMVYN

Best Arabidopsis Sequence Match ( AT1G53750.1 )
(BLAST)

001: MVRDIEDEIR DEKNPRPLDE DDIALLKTYG LGPYSAPIKK VEKEIKDLAK KINDLCGIKE SDTGLAPPSQ WDLVSDKQMM QEEQPLQVAR CTKIISPNTE
101: DAKYVINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LESRTQIFKI HTRTMNCERD IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDAVNKVI KGYQKFSATP KYMVYN

Arabidopsis Description

RPT1ARPT1A [Source:UniProtKB/TrEMBL;Acc:A0A178W3N8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.