Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
golgi:
25769308
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G326400.1 | Wheat | cytosol | 100.0 | 100.0 |
| TraesCSU01G080700.1 | Wheat | cytosol | 100.0 | 100.0 |
| HORVU6Hr1G083150.1 | Barley | cytosol | 100.0 | 100.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 96.95 | 97.18 |
| Bra005023.1-P | Field mustard | cytosol | 54.46 | 97.07 |
| TraesCS7B01G060900.1 | Wheat | golgi | 96.71 | 96.71 |
| GSMUA_Achr8P16830_001 | Banana | cytosol | 96.24 | 96.47 |
| KRH69005 | Soybean | nucleus | 95.77 | 95.77 |
| PGSC0003DMT400023656 | Potato | cytosol | 96.01 | 95.56 |
| CDY30665 | Canola | cytosol | 95.54 | 95.54 |
| VIT_09s0002g00170.t01 | Wine grape | cytosol | 95.54 | 95.54 |
| Solyc03g123730.2.1 | Tomato | nucleus | 95.77 | 95.33 |
| CDY36602 | Canola | cytosol | 95.31 | 95.31 |
| CDY24076 | Canola | cytosol | 95.31 | 95.31 |
| Bra039688.1-P | Field mustard | cytosol | 95.07 | 95.07 |
| AT1G53750.1 | Thale cress | cytosol | 95.07 | 95.07 |
| PGSC0003DMT400012446 | Potato | cytosol | 95.31 | 94.64 |
| CDY25685 | Canola | cytosol | 94.6 | 94.6 |
| CDY02494 | Canola | cytosol | 94.6 | 94.6 |
| Bra030922.1-P | Field mustard | cytosol | 94.6 | 94.6 |
| CDX74842 | Canola | cytosol | 90.61 | 93.69 |
| CDY20470 | Canola | cytosol, plasma membrane | 93.43 | 93.43 |
| Bra040569.1-P | Field mustard | cytosol | 93.66 | 92.15 |
| CDY08201 | Canola | cytosol | 74.18 | 89.01 |
| CDY30663 | Canola | cytosol | 76.29 | 75.23 |
| AT1G53780.2 | Thale cress | cytosol | 81.46 | 55.97 |
| TraesCS7B01G254400.1 | Wheat | cytosol | 46.01 | 46.34 |
| TraesCS6B01G207100.1 | Wheat | cytosol | 45.31 | 46.17 |
| TraesCS7B01G280400.1 | Wheat | cytosol, unclear | 38.73 | 41.25 |
| TraesCS6B01G188500.1 | Wheat | cytosol | 38.5 | 41.0 |
| TraesCS7B01G468900.1 | Wheat | cytosol | 37.56 | 40.2 |
| TraesCS7B01G036400.1 | Wheat | cytosol | 39.2 | 39.11 |
| TraesCS3B01G457100.1 | Wheat | cytosol, golgi | 39.67 | 38.94 |
| TraesCS2B01G499600.1 | Wheat | cytosol | 36.85 | 37.65 |
| TraesCS2B01G100400.1 | Wheat | cytosol, plastid | 36.62 | 37.59 |
| TraesCS4B01G189200.1 | Wheat | cytosol | 38.5 | 36.44 |
| TraesCS2B01G105700.1 | Wheat | cytosol | 38.26 | 36.3 |
| TraesCS2B01G494200.1 | Wheat | cytosol | 37.32 | 34.87 |
| TraesCS2B01G493900.1 | Wheat | cytosol | 36.15 | 34.0 |
| TraesCS2B01G373100.1 | Wheat | cytosol | 28.64 | 21.44 |
| TraesCS1B01G235400.1 | Wheat | cytosol | 29.81 | 19.78 |
| TraesCS3B01G171400.1 | Wheat | cytosol | 31.22 | 18.29 |
| TraesCS3B01G172100.1 | Wheat | cytosol | 32.86 | 17.72 |
| TraesCS3B01G154400.1 | Wheat | cytosol | 32.39 | 17.51 |
| TraesCS1B01G259200.1 | Wheat | cytosol | 32.39 | 17.49 |
| TraesCS1B01G419200.1 | Wheat | cytosol | 32.16 | 17.36 |
| TraesCS4B01G268400.1 | Wheat | golgi | 33.1 | 17.34 |
| TraesCS3B01G171200.1 | Wheat | cytosol | 31.92 | 17.26 |
| TraesCS4B01G268200.1 | Wheat | cytosol | 33.1 | 17.26 |
| TraesCS3B01G172000.1 | Wheat | cytosol | 31.22 | 16.96 |
| TraesCS1B01G192400.1 | Wheat | cytosol | 32.16 | 16.96 |
| TraesCS1B01G235300.1 | Wheat | cytosol | 31.69 | 16.88 |
| TraesCS1B01G235500.1 | Wheat | cytosol | 31.46 | 16.75 |
| TraesCS3B01G487900.1 | Wheat | mitochondrion | 27.7 | 15.84 |
| TraesCS3B01G171300.1 | Wheat | cytosol | 25.59 | 14.95 |
| TraesCS5B01G323100.1 | Wheat | cytosol | 18.08 | 13.25 |
| TraesCS4B01G108300.1 | Wheat | plastid | 29.81 | 12.7 |
| TraesCS1B01G089700.1 | Wheat | cytosol, plastid | 29.11 | 12.64 |
| TraesCS2B01G480000.3 | Wheat | mitochondrion | 26.76 | 12.22 |
| TraesCS5B01G299200.1 | Wheat | mitochondrion | 22.77 | 8.87 |
| TraesCS7B01G174800.1 | Wheat | cytosol | 21.36 | 8.83 |
Protein Annotations
| Gene3D:1.10.8.60 | MapMan:19.2.6.2.1.1 | Gene3D:2.40.50.140 | InterPro:26S_Psome_P45-like | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase |
| InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0030163 |
| InterPro:P-loop_NTPase | PFAM:PF00004 | ScanProsite:PS00674 | PANTHER:PTHR23073 | PANTHER:PTHR23073:SF60 | SMART:SM00382 |
| SUPFAM:SSF52540 | TIGRFAMs:TIGR01242 | EnsemblPlantsGene:TraesCS6B01G376500 | EnsemblPlants:TraesCS6B01G376500.1 | TIGR:cd00009 | SEG:seg |
Description
No Description!
Coordinates
chr6B:+:651415571..651419409
Molecular Weight (calculated)
47641.8 Da
IEP (calculated)
5.702
GRAVY (calculated)
-0.405
Length
426 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPEPEDDIM AEKNPRPLDE DDIALLKTYG LGPYSTSIKT AEKEIKELAK RINDLCGIKE SDTGLAPPSQ WDLVSDKQMM QEEQPLQVAR CTKIINPNTD
101: DAKYMINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIIFFDEV DAIGGARFDD GAGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LEGRTQIFKI HTRTMNCERD IRFELLARLC PNATGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDSVNKVI KGYQKFSATP KYMVYN
101: DAKYMINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIIFFDEV DAIGGARFDD GAGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LEGRTQIFKI HTRTMNCERD IRFELLARLC PNATGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDSVNKVI KGYQKFSATP KYMVYN
001: MVRDIEDEIR DEKNPRPLDE DDIALLKTYG LGPYSAPIKK VEKEIKDLAK KINDLCGIKE SDTGLAPPSQ WDLVSDKQMM QEEQPLQVAR CTKIISPNTE
101: DAKYVINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LESRTQIFKI HTRTMNCERD IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDAVNKVI KGYQKFSATP KYMVYN
101: DAKYVINVKQ IAKFVVGLGD KVSPTDIEEG MRVGVDRNKY QIQIPLPPKI DPSVTMMTVE EKPDVTYNDV GGCKEQIEKM REVVELPMLH PEKFVKLGID
201: PPKGVLCYGP PGTGKTLLAR AVANRTDACF IRVIGSELVQ KYVGEGARMV RELFQMARSK KACIVFFDEV DAIGGARFDD GVGGDNEVQR TMLEIVNQLD
301: GFDARGNIKV LMATNRPDTL DPALLRPGRL DRKVEFGLPD LESRTQIFKI HTRTMNCERD IRFELLARLC PNSTGADIRS VCTEAGMYAI RARRKTVTEK
401: DFLDAVNKVI KGYQKFSATP KYMVYN
Arabidopsis Description
RPT1ARPT1A [Source:UniProtKB/TrEMBL;Acc:A0A178W3N8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.