Factsheet for TraesCS1B01G235500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G223800.1	Wheat	cytosol	97.62	97.62
TraesCS1D01G253100.1	Wheat	cytosol	97.5	97.5
TraesCSU01G001000.1	Wheat	cytosol	97.62	97.26
TraesCS1B01G235300.1	Wheat	cytosol	97.25	97.25
TraesCS1A01G222100.1	Wheat	cytosol	96.88	96.88
TraesCS1B01G235400.1	Wheat	cytosol	77.38	96.42
HORVU1Hr1G060370.1	Barley	cytosol	93.75	92.94
TraesCS1B01G192400.1	Wheat	cytosol	93.5	92.57
HORVU1Hr1G060340.2	Barley	cytosol	93.75	92.25
TraesCS4B01G268200.1	Wheat	cytosol	91.25	89.35
TraesCS4B01G268400.1	Wheat	golgi	90.62	89.18
Os03t0151800-02	Rice	cytosol, extracellular, nucleus, plasma membrane, plastid	90.0	89.0
EER94171	Sorghum	cytosol	90.0	88.89
Zm00001d032859_P006	Maize	plasma membrane	89.88	88.77
Zm00001d014124_P001	Maize	cytosol, plasma membrane	89.88	88.66
EER92840	Sorghum	cytosol	89.62	88.52
TraesCS3B01G154400.1	Wheat	cytosol	82.12	83.38
TraesCS3B01G171200.1	Wheat	cytosol	80.62	81.85
TraesCS3B01G172100.1	Wheat	cytosol	80.75	81.77
TraesCS1B01G419200.1	Wheat	cytosol	80.62	81.75
TraesCS1B01G259200.1	Wheat	cytosol	80.62	81.75
TraesCS3B01G172000.1	Wheat	cytosol	80.0	81.63
TraesCS3B01G171400.1	Wheat	cytosol	74.12	81.57
GSMUA_Achr3P00260_001	Banana	cytosol	49.12	80.53
TraesCS3B01G171300.1	Wheat	cytosol	72.62	79.7
TraesCS5B01G323100.1	Wheat	cytosol	57.62	79.35
TraesCS2B01G373100.1	Wheat	cytosol	28.62	40.25
TraesCS3B01G487900.1	Wheat	mitochondrion	31.38	33.69
TraesCS7B01G280400.1	Wheat	cytosol, unclear	16.75	33.5
TraesCS6B01G188500.1	Wheat	cytosol	16.62	33.25
TraesCS7B01G468900.1	Wheat	cytosol	16.25	32.66
TraesCS7B01G060900.1	Wheat	golgi	17.0	31.92
TraesCS6B01G376500.1	Wheat	golgi	16.75	31.46
TraesCS2B01G100400.1	Wheat	cytosol, plastid	15.75	30.36
TraesCS2B01G499600.1	Wheat	cytosol	15.62	29.98
TraesCS7B01G036400.1	Wheat	cytosol	15.38	28.81
TraesCS3B01G457100.1	Wheat	cytosol, golgi	15.5	28.57
TraesCS2B01G494200.1	Wheat	cytosol	16.25	28.51
TraesCS2B01G493900.1	Wheat	cytosol	15.75	27.81
TraesCS6B01G207100.1	Wheat	cytosol	14.38	27.51
TraesCS1B01G089700.1	Wheat	cytosol, plastid	33.62	27.42
TraesCS4B01G189200.1	Wheat	cytosol	15.38	27.33
TraesCS4B01G108300.1	Wheat	plastid	34.0	27.2
TraesCS7B01G254400.1	Wheat	cytosol	14.38	27.19
TraesCS2B01G105700.1	Wheat	cytosol	15.12	26.95
TraesCS2B01G480000.3	Wheat	mitochondrion	26.88	23.04
TraesCS5B01G299200.1	Wheat	mitochondrion	23.62	17.28
TraesCS7B01G174800.1	Wheat	cytosol	22.0	17.09

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:AAA_ATPase_CDC48	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom
InterPro:Cdc48_dom2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359	PFAM:PF02933	ScanProsite:PS00674
PANTHER:PTHR23077	PANTHER:PTHR23077:SF122	SMART:SM00382	SMART:SM01072	SMART:SM01073	SUPFAM:SSF50692
SUPFAM:SSF52540	SUPFAM:SSF54585	TIGRFAMs:TIGR01243	EnsemblPlantsGene:TraesCS1B01G235500	EnsemblPlants:TraesCS1B01G235500.1	TIGR:cd00009
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:421531542..421533944

Molecular Weight (calculated)

88784.1 Da

IEP (calculated)

4.920

GRAVY (calculated)

-0.329

Length

800 amino acids

Sequence
(BLAST)

001: MASQGDASGN KDYSTAILER NKSPNRLVVD EATNDENSTV ALHPDTMDSL ELFHGDIVLL KGKKRKDTVC ILLPDGTCDK TKVRMNKVVR KNLRVRLGDV
101: VSVHQCPDVK YGKRVHVLPV DDTVQGIAGN LFDAFLRPYF LEAYRPLRKG DLFLVRGGMT SVEFKVVETD PAEYCIVASD TEIFCDGEPV KREDEERLDD
201: VGYDDVGGVR KQMAQIRELV ELPLRHPQLF KCIGVKPPKG ILLYGPPGTG KTLIARAVAN ETGAFFFLIN GPEIMSKMAG ESESNLRKAF EEAEKNAPAI
301: IFIDEIDSIA PKRDKTNGEV ERRIVSQLLT LMDGLKSRAH VIVMGATNRP NSIDLALRRF GRFDREIDIG VPDEVGRLEV LRIHTKNMKL AEDVELEHVS
401: RDTHGYVGAD LAALCTEAAL QCIREKMDVI DLEDDTIDAE ILNSMAVTND HFKIALGTSN PSALRETVVE VPNVSWKDVG GLEGVKRELQ ETVQYPVEYP
501: EKFEKFGMSP SKGVLFYGPP GCGKTLLAKP IANECQANFI SIKGPELLTM WFGESEANVR EIFDKARGSA PCVLFFDELD SIATQRGNSV GDAGGAADRV
601: LNQLLTKMDG MNAKKTVFII GATNRPDIID PALLRPGRLD QLIYIPLPDV ESRLQIFRAC LRKSPVAKDV DLNALAKYTQ GFSGADIMEI CQRACKYAIR
701: ENIEKDMEKE RRLKENPEAM EEDEVDEIKA AHFEESMRYA RRSVSDADIH KYQAFAQTLQ QSRGFGTEFR FADQPAAGAT AATDPFASST MAAEEDDLYS

Best Arabidopsis Sequence Match ( AT3G01610.1 )
(BLAST)

001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE

Arabidopsis Description

CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.