Factsheet for TraesCS4B01G268400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 23128297

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G267800.1	Wheat	cytosol	99.75	99.75
TraesCS4A01G035700.1	Wheat	plastid	99.39	99.39
HORVU4Hr1G072010.4	Barley	cytosol	99.14	98.9
TraesCS4B01G268200.1	Wheat	cytosol	98.52	98.04
EER92840	Sorghum	cytosol	95.08	95.43
Zm00001d014124_P001	Maize	cytosol, plasma membrane	94.83	95.07
EER94171	Sorghum	cytosol	94.71	95.06
Os03t0151800-02	Rice	cytosol, extracellular, nucleus, plasma membrane, plastid	94.34	94.81
Zm00001d032859_P006	Maize	plasma membrane	94.22	94.57
TraesCS1B01G235400.1	Wheat	cytosol	73.19	92.68
TraesCS1B01G192400.1	Wheat	cytosol	91.76	92.33
TraesCS1B01G235300.1	Wheat	cytosol	90.16	91.62
TraesCS1B01G235500.1	Wheat	cytosol	89.18	90.62
TraesCS3B01G154400.1	Wheat	cytosol	82.16	84.77
TraesCS1B01G419200.1	Wheat	cytosol	81.67	84.16
TraesCS3B01G171200.1	Wheat	cytosol	81.3	83.88
GSMUA_Achr3P00260_001	Banana	cytosol	50.31	83.81
TraesCS3B01G172000.1	Wheat	cytosol	80.57	83.55
TraesCS1B01G259200.1	Wheat	cytosol	81.06	83.52
TraesCS3B01G172100.1	Wheat	cytosol	81.06	83.42
TraesCS3B01G171400.1	Wheat	cytosol	74.54	83.36
TraesCS3B01G171300.1	Wheat	cytosol	72.82	81.21
TraesCS5B01G323100.1	Wheat	cytosol	57.81	80.89
TraesCS2B01G373100.1	Wheat	cytosol	28.54	40.77
TraesCS7B01G280400.1	Wheat	cytosol, unclear	16.73	34.0
TraesCS3B01G487900.1	Wheat	mitochondrion	31.0	33.83
TraesCS6B01G188500.1	Wheat	cytosol	16.61	33.75
TraesCS7B01G468900.1	Wheat	cytosol	16.48	33.67
TraesCS7B01G060900.1	Wheat	golgi	17.34	33.1
TraesCS6B01G376500.1	Wheat	golgi	17.34	33.1
TraesCS2B01G100400.1	Wheat	cytosol, plastid	15.99	31.33
TraesCS2B01G499600.1	Wheat	cytosol	15.74	30.7
TraesCS7B01G254400.1	Wheat	cytosol	15.38	29.55
TraesCS6B01G207100.1	Wheat	cytosol	15.13	29.43
TraesCS2B01G494200.1	Wheat	cytosol	16.48	29.39
TraesCS7B01G036400.1	Wheat	cytosol	15.25	29.04
TraesCS3B01G457100.1	Wheat	cytosol, golgi	15.5	29.03
TraesCS2B01G493900.1	Wheat	cytosol	15.99	28.7
TraesCS4B01G189200.1	Wheat	cytosol	15.62	28.22
TraesCS2B01G105700.1	Wheat	cytosol	15.5	28.06
TraesCS1B01G089700.1	Wheat	cytosol, plastid	32.84	27.22
TraesCS4B01G108300.1	Wheat	plastid	33.33	27.1
TraesCS2B01G480000.3	Wheat	mitochondrion	26.81	23.37
TraesCS7B01G174800.1	Wheat	cytosol	22.14	17.48
TraesCS5B01G299200.1	Wheat	mitochondrion	23.12	17.18

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:AAA_ATPase_CDC48	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom
InterPro:Cdc48_dom2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359	PFAM:PF02933	ScanProsite:PS00674
PANTHER:PTHR23077	PANTHER:PTHR23077:SF122	SMART:SM00382	SMART:SM01072	SMART:SM01073	SUPFAM:SSF50692
SUPFAM:SSF52540	SUPFAM:SSF54585	TIGRFAMs:TIGR01243	EnsemblPlantsGene:TraesCS4B01G268400	EnsemblPlants:TraesCS4B01G268400.1	TIGR:cd00009
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4B:-:542751933..542755957

Molecular Weight (calculated)

90190.3 Da

IEP (calculated)

4.912

GRAVY (calculated)

-0.398

Length

813 amino acids

Sequence
(BLAST)

001: MAAPTPQGEA SSSDPKSKKD YSTAILERKK SPNRLVVDEA TNDDNSVVAL HPDTMERLQL FRGDTVLLKG KKRKDTICIV LADDTCEEPK IRMNKTVRKN
101: LRVRLGDVVS VHQCPDVKYG KRVHTLPIDD TVEGITGNLF DAFLKPYFLE AYRPLRKGDL FLVRGGMRSV EFKVIETDPA EYCIVAPDTE IFCDGEPVKR
201: EDEERLDDVG YDDVGGVRKQ MAQIRELVEL PLRHPQLFKS IGVKPPKGIL LFGPPGSGKT LIARAVANET GAFFFLINGP EIMSKLAGES ESNLRKAFEE
301: AEKNAPSIIF IDEIDSIAPK REKTNGEVER RIVSQLLTLM DGLKSRAHVI VMGATNRPNS IDPALRRFGR FDREIDIGVP DEVGRLEVLR IHTKNMKLAE
401: DVELEHISRD THGYVGADLA ALCTEAALQC IREKMDIIDL EDETIDAEIL NSMAVTNDHF KTALTTSNPS ALRETVVEVP NVSWEDIGGL ENVKRELQET
501: VQYPVEHPEK FEKFGMSPSK GVLFYGPPGC GKTLLAKAIA NECQANFISI KGPELLTMWF GESEANVREI FDKARGSAPC VLFFDELDSI ATQRGSSSGD
601: AGGAADRVLN QLLTEMDGMN AKKTVFIIGA TNRPDIIDPA LLRPGRLDQL IYIPLPDVES RHQIFKACLR KSPLAKDIDL SALAKYTQGF SGADITEICQ
701: RACKYAIREN IEKDIERERR RKDNPEAMEE DEGDEVAEIR AAHFEESMKY ARRSVSDADI RKYQAFAQTL QQSRGFGSEF RFPDQPAAGA SSATAADPFA
801: SAAAAADDDD LYS

Best Arabidopsis Sequence Match ( AT5G03340.1 )
(BLAST)

001: MSNEPESSDS KTKKDFSTAI LERKKSPNRL VVDEAINDDN SVVSLHPTTM EKLQLFRGDT ILIKGKKRKD TVCIALADET CEEPKIRMNK VVRSNLRVRL
101: GDVISVHQCP DVKYGKRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDEVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV SNEHFHTALG NSNPSALRET VVEVPNVSWE DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG NSAGDAGGAA
601: DRVLNQLLTE MDGMNAKKTV FIIGATNRPD IIDSALLRPG RLDQLIYIPL PDEDSRLNIF KACLRKSPVA KDVDVTALAK YTQGFSGADI TEICQRACKY
701: AIRENIEKDI ENERRRSQNP EAMEEDMVDD EVSEIRAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFDS TAGVGRTTGV AAADPFATSA
801: AAADDDDLYS

Arabidopsis Description

CDC48ECell division control protein 48 homolog E [Source:UniProtKB/Swiss-Prot;Acc:Q9LZF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.