Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G145000.1 | Wheat | cytosol | 82.85 | 86.78 |
| TraesCS3B01G154400.1 | Wheat | cytosol | 93.42 | 86.42 |
| TraesCS3B01G171200.1 | Wheat | cytosol | 93.28 | 86.29 |
| TraesCS3B01G172100.1 | Wheat | cytosol | 93.14 | 85.95 |
| TraesCS1B01G259200.1 | Wheat | cytosol | 93.0 | 85.93 |
| TraesCS3B01G172000.1 | Wheat | cytosol | 92.04 | 85.59 |
| TraesCS1B01G419200.1 | Wheat | cytosol | 92.04 | 85.04 |
| HORVU0Hr1G006340.1 | Barley | cytosol | 91.91 | 85.03 |
| TraesCS5B01G323100.1 | Wheat | cytosol | 66.67 | 83.65 |
| TraesCS3B01G171400.1 | Wheat | cytosol | 83.13 | 83.36 |
| HORVU3Hr1G029450.1 | Barley | cytosol | 91.91 | 82.92 |
| HORVU3Hr1G029440.1 | Barley | cytosol | 91.91 | 82.31 |
| EER95525 | Sorghum | cytosol | 81.34 | 76.03 |
| KXG40206 | Sorghum | cytosol | 81.07 | 75.58 |
| TraesCS1B01G235400.1 | Wheat | cytosol | 65.98 | 74.92 |
| KRG99061 | Soybean | cytosol | 20.44 | 74.5 |
| CDX78154 | Canola | cytosol | 74.9 | 73.39 |
| TraesCS1B01G235300.1 | Wheat | cytosol | 80.38 | 73.25 |
| VIT_08s0040g01480.t01 | Wine grape | cytosol | 80.93 | 73.2 |
| CDY11249 | Canola | cytosol | 80.11 | 73.18 |
| KRH67721 | Soybean | endoplasmic reticulum, nucleus | 80.93 | 73.02 |
| KRG96011 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 80.8 | 72.9 |
| TraesCS4B01G268400.1 | Wheat | golgi | 81.21 | 72.82 |
| Bra001297.1-P | Field mustard | cytosol | 80.8 | 72.81 |
| CDX73996 | Canola | cytosol | 80.8 | 72.81 |
| KRH19916 | Soybean | endoplasmic reticulum, mitochondrion | 80.93 | 72.75 |
| TraesCS4B01G268200.1 | Wheat | cytosol | 81.48 | 72.7 |
| CDY07941 | Canola | cytosol | 80.66 | 72.68 |
| PGSC0003DMT400050662 | Potato | cytosol | 80.25 | 72.67 |
| TraesCS1B01G235500.1 | Wheat | cytosol | 79.7 | 72.62 |
| CDY41316 | Canola | cytosol, extracellular | 80.66 | 72.59 |
| KRH32530 | Soybean | endoplasmic reticulum, mitochondrion | 80.93 | 72.57 |
| CDX73571 | Canola | cytosol | 73.94 | 72.54 |
| Bra034089.1-P | Field mustard | cytosol | 80.52 | 72.47 |
| CDY13308 | Canola | cytosol | 80.52 | 72.47 |
| AT5G03340.1 | Thale cress | cytosol | 80.52 | 72.47 |
| CDY22207 | Canola | cytosol | 80.52 | 72.47 |
| AT3G09840.1 | Thale cress | cytosol | 80.38 | 72.44 |
| Solyc11g069720.1.1 | Tomato | cytosol, extracellular, nucleus, plastid | 79.97 | 72.42 |
| Solyc06g074980.2.1 | Tomato | nucleus | 79.84 | 72.3 |
| PGSC0003DMT400031321 | Potato | cytosol | 79.84 | 72.3 |
| PGSC0003DMT400027096 | Potato | cytosol | 80.11 | 72.28 |
| TraesCS1B01G192400.1 | Wheat | cytosol | 80.11 | 72.28 |
| CDY54618 | Canola | cytosol | 80.11 | 72.28 |
| KRH26511 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 79.97 | 72.24 |
| Solyc10g084050.1.1 | Tomato | cytosol, nucleus, plastid, unclear | 79.97 | 72.15 |
| AT3G53230.1 | Thale cress | cytosol | 80.66 | 72.15 |
| Bra003123.1-P | Field mustard | cytosol | 80.11 | 72.1 |
| Bra029795.1-P | Field mustard | cytosol | 79.97 | 72.06 |
| CDY41581 | Canola | cytosol | 79.84 | 72.03 |
| KRH22853 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 79.7 | 72.0 |
| PGSC0003DMT400055513 | Potato | cytosol | 79.7 | 72.0 |
| KRG94277 | Soybean | cytosol | 20.44 | 71.98 |
| CDX80862 | Canola | cytosol, plastid | 79.84 | 71.94 |
| KRH30601 | Soybean | cytosol | 79.29 | 71.71 |
| Bra006978.1-P | Field mustard | cytosol | 79.42 | 71.39 |
| Solyc09g008070.2.1 | Tomato | cytosol, unclear | 78.46 | 70.79 |
| VIT_06s0061g00340.t01 | Wine grape | cytosol | 73.25 | 69.8 |
| KRH25081 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 68.04 | 68.51 |
| CDX67563 | Canola | cytosol | 78.46 | 65.07 |
| KRH45638 | Soybean | cytosol | 24.28 | 55.14 |
| GSMUA_Achr3P00250_001 | Banana | cytosol | 14.4 | 53.57 |
| Bra005733.1-P | Field mustard | cytosol | 80.38 | 53.08 |
| TraesCS2B01G373100.1 | Wheat | cytosol | 26.61 | 34.09 |
| TraesCS3B01G487900.1 | Wheat | mitochondrion | 29.49 | 28.86 |
| TraesCS7B01G060900.1 | Wheat | golgi | 15.23 | 26.06 |
| TraesCS6B01G376500.1 | Wheat | golgi | 14.95 | 25.59 |
| TraesCS7B01G280400.1 | Wheat | cytosol, unclear | 13.31 | 24.25 |
| TraesCS6B01G188500.1 | Wheat | cytosol | 13.17 | 24.0 |
| TraesCS7B01G468900.1 | Wheat | cytosol | 12.76 | 23.37 |
| TraesCS7B01G036400.1 | Wheat | cytosol | 13.58 | 23.18 |
| TraesCS2B01G100400.1 | Wheat | cytosol, plastid | 13.17 | 23.13 |
| TraesCS3B01G457100.1 | Wheat | cytosol, golgi | 13.72 | 23.04 |
| TraesCS2B01G499600.1 | Wheat | cytosol | 13.17 | 23.02 |
| TraesCS1B01G089700.1 | Wheat | cytosol, plastid | 30.45 | 22.63 |
| TraesCS4B01G108300.1 | Wheat | plastid | 30.59 | 22.3 |
| TraesCS2B01G494200.1 | Wheat | cytosol | 13.72 | 21.93 |
| TraesCS6B01G207100.1 | Wheat | cytosol | 12.48 | 21.77 |
| TraesCS7B01G254400.1 | Wheat | cytosol | 12.62 | 21.75 |
| TraesCS2B01G493900.1 | Wheat | cytosol | 13.44 | 21.63 |
| TraesCS4B01G189200.1 | Wheat | cytosol | 12.21 | 19.78 |
| TraesCS2B01G480000.3 | Wheat | mitochondrion | 24.97 | 19.51 |
| TraesCS2B01G105700.1 | Wheat | cytosol | 11.93 | 19.38 |
| TraesCS7B01G174800.1 | Wheat | cytosol | 21.4 | 15.15 |
| TraesCS5B01G299200.1 | Wheat | mitochondrion | 21.54 | 14.35 |
Protein Annotations
| Gene3D:1.10.8.60 | MapMan:19.2.4.2.1 | Gene3D:2.40.40.20 | Gene3D:3.10.330.10 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase |
| InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | InterPro:Asp_de-COase-like_dom_sf | InterPro:CDC48_domain_2-like_sf | InterPro:CDC4_N-term_subdom | InterPro:Cdc48_dom2 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | InterPro:P-loop_NTPase | PFAM:PF00004 |
| PFAM:PF02359 | PFAM:PF02933 | ScanProsite:PS00674 | PANTHER:PTHR23077 | PANTHER:PTHR23077:SF122 | SMART:SM00382 |
| SMART:SM01072 | SMART:SM01073 | SUPFAM:SSF50692 | SUPFAM:SSF52540 | SUPFAM:SSF54585 | EnsemblPlantsGene:TraesCS3B01G171300 |
| EnsemblPlants:TraesCS3B01G171300.1 | TIGR:cd00009 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3B:+:172092447..172094813
Molecular Weight (calculated)
80792.9 Da
IEP (calculated)
5.344
GRAVY (calculated)
-0.285
Length
729 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTAASKKA ANRLVVEEAT TNDDNSVCNL HPETMEKLSI YKGDIVLLKG KRRHNTVYVA LPDDTCEGHK LRINKVARSN LRVRIADVVS VHLCHDAKFG
101: RRVHILPLDD TVEGIAGNLF DAYLKLYFLD AYRPLHKGDL FLVRGGMRSV EFKVMEIDPA VEYCIVAPDT EIFCEGEPVK REDEERLDVI SYDDVGGMGK
201: PLTLIRELVE LPLRHPQIFK SIGVKPPKGI LLYGPPGSGK TLIARAVANE TGAFFFLING PEIMSKMAGE SENNLRKAFE EAEKNAPSII FIDEIDSIAP
301: NRKKTHGEVE RCIVSQLMTL MDGMKARAHV IVMGATNHPN SIDPALRRFG RFDREIDIGV PDEVARLEVL RIHTKNMKLD EGVNIEVIAK DTHGYVGADL
401: AALCTEAALQ CIREKMDVID LEDDTIDAEI LNSMAVTNDH LKTALVGMNP LEGVKRELQE TVQYPVEHPE KFEKFGMSPS KGVLFYGPPG CGKTLLAKAI
501: ANECQANFIS IKGPELLTMW FGESEANVRE IFDKARQSAT CVLFFDEVDS TATQRGGRVG DAGGAADRVL NQLLTEMDSM NAKKTIFKAC LRKSPVAKDV
601: HLGALARFTT GFSGADITEV CQRACKYAIR EDIEKDMERQ RMGKDTMEVD GGQEDEVAQI KAVHFEESMK YPRRSVSDAD IRKYQAFAQT LQQSRGFGTD
701: FLFPAQTQAA EAAVHTSAAA DEDEDDLYK
101: RRVHILPLDD TVEGIAGNLF DAYLKLYFLD AYRPLHKGDL FLVRGGMRSV EFKVMEIDPA VEYCIVAPDT EIFCEGEPVK REDEERLDVI SYDDVGGMGK
201: PLTLIRELVE LPLRHPQIFK SIGVKPPKGI LLYGPPGSGK TLIARAVANE TGAFFFLING PEIMSKMAGE SENNLRKAFE EAEKNAPSII FIDEIDSIAP
301: NRKKTHGEVE RCIVSQLMTL MDGMKARAHV IVMGATNHPN SIDPALRRFG RFDREIDIGV PDEVARLEVL RIHTKNMKLD EGVNIEVIAK DTHGYVGADL
401: AALCTEAALQ CIREKMDVID LEDDTIDAEI LNSMAVTNDH LKTALVGMNP LEGVKRELQE TVQYPVEHPE KFEKFGMSPS KGVLFYGPPG CGKTLLAKAI
501: ANECQANFIS IKGPELLTMW FGESEANVRE IFDKARQSAT CVLFFDEVDS TATQRGGRVG DAGGAADRVL NQLLTEMDSM NAKKTIFKAC LRKSPVAKDV
601: HLGALARFTT GFSGADITEV CQRACKYAIR EDIEKDMERQ RMGKDTMEVD GGQEDEVAQI KAVHFEESMK YPRRSVSDAD IRKYQAFAQT LQQSRGFGTD
701: FLFPAQTQAA EAAVHTSAAA DEDEDDLYK
001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE
Arabidopsis Description
CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.