CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003123.1-P	Field mustard	cytosol	90.1	97.78
CDY13308	Canola	cytosol	89.31	96.91
AT3G53230.1	Thale cress	cytosol	86.35	93.13
KRG96011	Soybean	endoplasmic reticulum, mitochondrion, nucleus	83.05	90.35
CDX73571	Canola	cytosol	76.34	90.31
CDX78154	Canola	cytosol	76.34	90.19
CDY11249	Canola	cytosol	81.8	90.1
VIT_08s0040g01480.t01	Wine grape	cytosol	82.59	90.07
KRH67721	Soybean	endoplasmic reticulum, nucleus	82.48	89.73
KRH19916	Soybean	endoplasmic reticulum, mitochondrion	82.59	89.52
GSMUA_Achr5P15500_001	Banana	cytosol, plasma membrane	82.37	89.49
Zm00001d048409_P001	Maize	cytosol	81.57	89.18
KRH32530	Soybean	endoplasmic reticulum, mitochondrion	82.48	89.18
Zm00001d027707_P001	Maize	cytosol, plasma membrane	81.8	89.1
CDX73996	Canola	cytosol	81.8	88.88
CDY22207	Canola	cytosol	81.8	88.77
CDY41316	Canola	cytosol, extracellular	81.8	88.77
GSMUA_Achr4P26800_001	Banana	cytosol	81.68	88.75
CDY54618	Canola	cytosol	81.57	88.74
CDY41581	Canola	cytosol	81.46	88.61
CDY07941	Canola	cytosol	81.46	88.5
Zm00001d032859_P006	Maize	plasma membrane	81.34	88.27
Os03t0151800-02	Rice	cytosol, extracellular, nucleus, plasma membrane, plastid	81.23	88.26
Zm00001d014124_P001	Maize	cytosol, plasma membrane	81.34	88.16
CDX80862	Canola	cytosol, plastid	81.11	88.13
GSMUA_Achr9P23550_001	Banana	mitochondrion	78.5	85.61
TraesCSU01G001000.1	Wheat	cytosol	77.47	84.81
Os10t0442600-01	Rice	cytosol, nucleus, plasma membrane, plastid	18.77	84.62
VIT_06s0061g00340.t01	Wine grape	cytosol	72.35	83.14
TraesCS3B01G154400.1	Wheat	cytosol	74.06	82.61
TraesCS3A01G144500.1	Wheat	cytosol	50.06	82.55
TraesCS3A01G145100.1	Wheat	cytosol	73.72	82.13
TraesCS1B01G419200.1	Wheat	cytosol	73.61	82.0
TraesCS3B01G171200.1	Wheat	cytosol	73.27	81.73
TraesCS3B01G171400.1	Wheat	cytosol	67.58	81.71
HORVU0Hr1G006340.1	Barley	cytosol	73.15	81.6
EER95525	Sorghum	cytosol	72.35	81.54
TraesCS1B01G259200.1	Wheat	cytosol	73.15	81.5
TraesCS3A01G145000.1	Wheat	cytosol	64.51	81.47
TraesCS3B01G172100.1	Wheat	cytosol	73.04	81.27
KXG40206	Sorghum	cytosol	72.24	81.2
TraesCS3B01G172000.1	Wheat	cytosol	72.35	81.12
HORVU3Hr1G029450.1	Barley	cytosol	73.15	79.58
HORVU3Hr1G029440.1	Barley	cytosol	73.15	78.99
TraesCS3B01G171300.1	Wheat	cytosol	65.07	78.46
TraesCS5B01G323100.1	Wheat	cytosol	51.76	78.31
TraesCS1A01G248500.1	Wheat	cytosol	53.01	78.06
Zm00001d032117_P001	Maize	cytosol	24.69	67.81
CDY25624	Canola	cytosol	13.2	46.22
CDY20370	Canola	cytosol	11.6	37.92
CDX74308	Canola	mitochondrion	29.12	36.26
CDY39032	Canola	cytosol	10.35	36.26
CDY04161	Canola	cytosol	24.69	35.99
CDX71534	Canola	cytosol	15.47	34.09
CDY22373	Canola	cytosol	15.47	34.09
CDY23949	Canola	cytosol	28.1	34.07
CDX84794	Canola	cytosol	28.56	33.78
CDY02428	Canola	cytosol, extracellular	15.24	33.58
CDY25226	Canola	cytosol	15.24	33.58
CDX91939	Canola	cytosol, mitochondrion	29.35	33.2
CDX74842	Canola	cytosol	15.36	32.77
CDY24076	Canola	cytosol	15.81	32.63
CDY30665	Canola	cytosol	15.81	32.63
CDY36602	Canola	cytosol	15.81	32.63
CDY02494	Canola	cytosol	15.7	32.39
CDY25685	Canola	cytosol	15.7	32.39
CDY20470	Canola	cytosol, plasma membrane	15.47	31.92
CDY45794	Canola	nucleus	28.78	31.74
CDX88666	Canola	cytosol	14.11	30.69
CDY02806	Canola	cytosol	14.11	30.69
CDY32714	Canola	cytosol	14.11	30.69
CDY32995	Canola	cytosol, extracellular	14.11	30.69
CDY43865	Canola	cytosol	14.11	30.69
CDY58566	Canola	cytosol	14.11	30.69
CDY33111	Canola	endoplasmic reticulum, plasma membrane, vacuole	24.8	30.45
CDY05176	Canola	cytosol	14.68	30.42
CDY18782	Canola	cytosol	14.68	30.42
CDY18801	Canola	cytosol	14.68	30.42
CDY27761	Canola	cytosol	14.68	30.42
CDX74142	Canola	cytosol	14.56	30.19
CDY40714	Canola	cytosol	14.56	30.19
CDY39033	Canola	cytosol	13.77	29.8
CDY35832	Canola	cytosol	13.88	29.12
CDX70903	Canola	cytosol	13.77	29.09
CDX89698	Canola	endoplasmic reticulum	22.98	29.06
CDY08201	Canola	cytosol	11.72	29.01
CDY06847	Canola	cytosol	14.56	28.89
CDX92914	Canola	cytosol, extracellular	14.45	28.67
CDY35245	Canola	cytosol	14.45	28.67
CDX72118	Canola	plastid	30.72	28.6
CDX97472	Canola	cytosol	14.33	28.31
CDY14224	Canola	cytosol	14.33	28.31
CDY30663	Canola	cytosol	13.88	28.24
CDY20371	Canola	cytosol, plastid	13.65	27.27
CDY56774	Canola	plastid	30.72	26.52
CDX89923	Canola	cytosol	22.98	26.44
CDY59958	Canola	cytosol	10.92	26.37
CDY32490	Canola	mitochondrion	25.48	24.16
CDY37450	Canola	mitochondrion	25.37	24.11
CDX88865	Canola	cytosol, extracellular	14.56	20.35
CDY02982	Canola	cytosol	26.39	19.68
CDY18139	Canola	extracellular, vacuole	6.48	18.81
CDX69950	Canola	cytosol	23.21	18.68
CDY62119	Canola	cytosol	23.21	18.68
CDY42324	Canola	cytosol, extracellular	14.56	17.85
CDY44958	Canola	cytosol, plasma membrane	14.56	17.75
CDY69655	Canola	cytosol, nucleus	0.91	3.52

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	GO:A0A078BX76
InterPro:AAA+_ATPase	InterPro:AAA_ATPase_CDC48	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	InterPro:CDC48_domain_2-like_sf
InterPro:CDC4_N-term_subdom	EnsemblPlants:CDX67563	ProteinID:CDX67563	ProteinID:CDX67563.1	InterPro:Cdc48_dom2	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00098697001
InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359	PFAM:PF02933	ScanProsite:PS00674	PANTHER:PTHR23077
PANTHER:PTHR23077:SF122	SMART:SM00382	SMART:SM01072	SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585
TIGRFAMs:TIGR01243	UniParc:UPI0004EF4A81	SEG:seg	:	:	:

Description

BnaA07g16030D

Coordinates

chrLK031787:+:948918..953663

Molecular Weight (calculated)

97873.6 Da

IEP (calculated)

4.875

GRAVY (calculated)

-0.330

Length

879 amino acids

Sequence
(BLAST)

001: MANQPESSDP KGAKRDFSTA ILEKKKAVNR LVVDEAINDD NSVVSLHPDS LTPWRSYSSF VEIPSYSSIY TCILYIPSKY DILFPPKVRG HPRKRFMVPS
101: ATTTSFAFSS NISPFHILNF LSWSCENVFN CVCIDIFRKD TVCIALADDT CDEPKIRMKK VVRSNLRVRL GDVISIHQCP DVKYGKRVHI LPLDDTIEGI
201: TGNIFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPDEYCVV APDTEIFCEG EPIKREDEER LDEVGYDDVG GVRKQMAQIR ELVELPLRHP
301: QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEGEKNA PSIIFIDELD SIAPKREKTH GEVERRIVSQ
401: LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE RVSKDTHGYV GADLAALCTE GALQCIREKM
501: DVIDLEDEEI DAEILNSMAV TNEHFQTALG NSNPSALRET VVEVPNVSWE DIGGLENVKR ELQETVQYPV EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL
601: AKAIANECQT NFISIKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG SSVGDAGGAA DRVLNQLLTE MDGMSAKKTV FIIGATNRPD
701: IIDPALLRPG RLDQLIYIPL PDEESRYQIF KSCLRKSPVA KDVDLRALAK YTQGFSGADI TEICQRACKY AIRENIEKDI EKERKKAETP EAMEEDEEEI
801: AEIKASHFEE SMKFARRSVS DADIRKYQAF AQTLQQSRGI GSEFRFPDAT GTGGAAAMAG GADPFATTGG AAEDDDLYS

Best Arabidopsis Sequence Match ( AT3G01610.1 )
(BLAST)

001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE

Arabidopsis Description

CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.