CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002662.1-P	Field mustard	cytosol	99.75	99.75
CDY43865	Canola	cytosol	99.5	99.5
CDY58566	Canola	cytosol	99.01	99.01
CDX88666	Canola	cytosol	99.01	99.01
CDY32714	Canola	cytosol	98.76	98.76
CDY02806	Canola	cytosol	98.51	98.51
AT5G58290.1	Thale cress	cytosol	97.28	96.32
HORVU2Hr1G107280.1	Barley	cytosol	87.13	95.14
VIT_06s0004g08220.t01	Wine grape	cytosol	95.05	91.87
KRH30674	Soybean	cytosol, nucleus	93.32	91.28
KRG98107	Soybean	cytosol	95.3	91.23
Solyc06g082660.2.1	Tomato	cytosol, nucleus	93.07	90.82
KRH30673	Soybean	cytosol, nucleus	95.05	90.78
Solyc06g082630.2.1	Tomato	cytosol, plastid	92.82	90.58
PGSC0003DMT400053010	Potato	cytosol	92.57	90.56
PGSC0003DMT400078301	Potato	cytosol	92.33	90.1
HORVU3Hr1G067470.2	Barley	cytosol	50.25	89.43
HORVU2Hr1G014000.1	Barley	cytosol	90.1	88.78
TraesCS2A01G086400.1	Wheat	cytosol	90.59	88.19
TraesCS2D01G083900.1	Wheat	golgi	90.59	88.19
TraesCS2D01G476000.1	Wheat	cytosol	90.84	88.01
TraesCS2B01G100400.1	Wheat	cytosol, plastid	90.35	87.95
TraesCS2B01G499600.1	Wheat	cytosol	90.59	87.77
KXG39890	Sorghum	cytosol	91.09	87.62
Os02t0325100-01	Rice	plastid	90.84	87.59
TraesCS2A01G475900.1	Wheat	cytosol	90.84	85.95
Zm00001d050616_P002	Maize	plastid	91.09	84.79
EER91182	Sorghum	cytosol	83.91	80.71
GSMUA_Achr7P21960_001	Banana	cytosol	93.07	77.69
Zm00001d015886_P002	Maize	cytosol	78.47	58.49
CDY06847	Canola	cytosol	46.78	42.66
CDY35245	Canola	cytosol	46.53	42.44
CDX92914	Canola	cytosol, extracellular	46.53	42.44
CDY14224	Canola	cytosol	46.29	42.02
CDX97472	Canola	cytosol	46.29	42.02
CDY20370	Canola	cytosol	27.23	40.89
CDY39032	Canola	cytosol	25.0	40.24
CDY25226	Canola	cytosol	38.86	39.35
CDY59958	Canola	cytosol	35.4	39.29
CDY02428	Canola	cytosol, extracellular	38.61	39.1
CDX71534	Canola	cytosol	38.61	39.1
CDY22373	Canola	cytosol	38.61	39.1
CDX70903	Canola	cytosol	40.1	38.94
CDY35832	Canola	cytosol	39.85	38.42
CDX74142	Canola	cytosol	39.11	37.26
CDY18801	Canola	cytosol	39.11	37.26
CDY18782	Canola	cytosol	39.11	37.26
CDY05176	Canola	cytosol	39.11	37.26
CDY40714	Canola	cytosol	39.11	37.26
CDY27761	Canola	cytosol	39.11	37.26
CDX74842	Canola	cytosol	37.87	37.14
CDY36602	Canola	cytosol	38.61	36.62
CDY30665	Canola	cytosol	38.61	36.62
CDY02494	Canola	cytosol	38.61	36.62
CDY25685	Canola	cytosol	38.61	36.62
CDY24076	Canola	cytosol	38.61	36.62
CDY20470	Canola	cytosol, plasma membrane	38.12	36.15
CDY39033	Canola	cytosol	34.9	34.73
CDY08201	Canola	cytosol	30.45	34.65
CDY30663	Canola	cytosol	36.39	34.03
CDY25624	Canola	cytosol	20.05	32.27
CDY20371	Canola	cytosol, plastid	34.16	31.36
CDX88865	Canola	cytosol, extracellular	39.6	25.44
CDY44958	Canola	cytosol, plasma membrane	39.85	22.33
CDY42324	Canola	cytosol, extracellular	39.6	22.32
CDY04161	Canola	cytosol	27.97	18.74
CDY33111	Canola	endoplasmic reticulum, plasma membrane, vacuole	27.72	15.64
CDX74308	Canola	mitochondrion	27.23	15.58
CDY11249	Canola	cytosol	30.45	15.41
CDY13308	Canola	cytosol	30.69	15.31
CDY41581	Canola	cytosol	30.45	15.22
CDY54618	Canola	cytosol	30.45	15.22
CDY07941	Canola	cytosol	30.45	15.2
CDX80862	Canola	cytosol, plastid	30.45	15.2
CDX73996	Canola	cytosol	30.45	15.2
CDY22207	Canola	cytosol	30.45	15.19
CDY41316	Canola	cytosol, extracellular	30.45	15.19
CDY23949	Canola	cytosol	26.98	15.03
CDX84794	Canola	cytosol	26.49	14.4
CDX91939	Canola	cytosol, mitochondrion	27.48	14.29
CDY45794	Canola	nucleus	27.97	14.18
CDX67563	Canola	cytosol	30.69	14.11
CDX89923	Canola	cytosol	25.25	13.35
CDX73571	Canola	cytosol	24.5	13.32
CDX78154	Canola	cytosol	24.5	13.31
CDX89698	Canola	endoplasmic reticulum	20.79	12.09
CDY37450	Canola	mitochondrion	26.73	11.68
CDX72118	Canola	plastid	27.23	11.65
CDY32490	Canola	mitochondrion	26.73	11.65
CDY56774	Canola	plastid	27.23	10.81
CDX69950	Canola	cytosol	26.73	9.89
CDY62119	Canola	cytosol	26.73	9.89
CDY02982	Canola	cytosol	28.22	9.67
CDY18139	Canola	extracellular, vacuole	1.98	2.64
CDY69655	Canola	cytosol, nucleus	0.25	0.44

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.6.2.1.3	Gene3D:2.40.50.140	InterPro:26S_Psome_P45-like	Gene3D:3.40.50.300	GO:A0A078H313
UniProt:A0A078H313	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	EnsemblPlants:CDY32995	ProteinID:CDY32995
ProteinID:CDY32995.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0030163
GO:GO:0036402	GO:GO:1901800	EnsemblPlantsGene:GSBRNA2T00053213001	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674
InterPro:PSMC4	PANTHER:PTHR23073	PANTHER:PTHR23073:SF8	SMART:SM00382	SUPFAM:SSF52540	TIGRFAMs:TIGR01242
UniParc:UPI0004EF3913	:	:	:	:	:

Description

BnaA10g12010DBnaA10g12010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H313]

Coordinates

chrLK032304:-:93656..96058

Molecular Weight (calculated)

45498.4 Da

IEP (calculated)

5.151

GRAVY (calculated)

-0.428

Length

404 amino acids

Sequence
(BLAST)

001: MAAAMVLDPK SSPPVMDQST TDEEDPYSRL KSLERQLEFT DIQEEYVKDE QKNLKRELLR AQEEVKRIQS VPLVIGQFME MVDQNNGIVG STTGSNYYVR
101: ILSTINREDL KPSASVALHR HSNALVDVLP PEADSSISLL SQSEKPDVSY NDIGGCDIQK QEIREAVELP LTHHELYKQI GIDPPRGVLL YGPPGTGKTM
201: LAKAVANHTT AAFIRVVGSE FVQKYLGEGP RMVRDVFRLA KENAPAIIFI DEVDAIATAR FDAQTGADRE VQRILMELLN QMDGFDQTVN VKVIMATNRA
301: DTLDPALLRP GRLDRKIEFP LPDRRQKRLV FQVCTAKMNL SDEVDLEDYV SRPDKISAAE IAAICQEAGM HAVRKNRYVI LPKDFEKGYR SNVKKPDTDF
401: EFYK

Best Arabidopsis Sequence Match ( AT2G20140.1 )
(BLAST)

001: MGQGPSGGLN RQGDRKPDGG EKKEKKFEPA APPARVGRKQ RKQKGPEAAA RLPTVTPSTK CKLRLLKLER IKDYLLMEEE FVANQERLKP QEEKAEEDRS
101: KVDDLRGTPM SVGNLEELID ENHAIVSSSV GPEYYVGILS FVDKDQLEPG CSILMHNKVL SVVGILQDEV DPMVSVMKVE KAPLESYADI GGLEAQIQEI
201: KEAVELPLTH PELYEDIGIK PPKGVILYGE PGTGKTLLAK AVANSTSATF LRVVGSELIQ KYLGDGPKLV RELFRVADDL SPSIVFIDEI DAVGTKRYDA
301: NSGGEREIQR TMLELLNQLD GFDSRGDVKV ILATNRIESL DPALLRPGRI DRKIEFPLPD IKTRRRIFQI HTSKMTLAED VNLEEFVMTK DEFSGADIKA
401: ICTEAGLLAL RERRMKVTHV DFKKAKEKVM FKKKEGVPEG LYM

Arabidopsis Description

RPT2BRPT2b [Source:UniProtKB/TrEMBL;Acc:A0A178VM16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.