CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84794	Canola	cytosol	87.59	85.46
CDY25624	Canola	cytosol	28.69	82.87
CDY45794	Canola	nucleus	88.0	80.05
CDX74308	Canola	mitochondrion	67.45	69.26
CDX91939	Canola	cytosol, mitochondrion	74.07	69.11
AT3G01610.2	Thale cress	nucleus	69.38	60.6
CDX89698	Canola	endoplasmic reticulum	54.76	57.12
Zm00001d009592_P001	Maize	cytosol	19.59	54.2
Zm00001d035913_P002	Maize	cytosol, mitochondrion	47.45	46.93
PGSC0003DMT400015455	Potato	mitochondrion	48.83	46.4
GSMUA_Achr4P03560_001	Banana	mitochondrion	49.66	46.04
Zm00001d045566_P001	Maize	cytosol, mitochondrion	48.69	45.96
VIT_01s0010g02600.t01	Wine grape	cytosol	52.28	45.94
EER87717	Sorghum	cytosol	48.97	45.81
Os06t0109400-01	Rice	cytosol	48.55	45.71
Solyc01g068330.2.1	Tomato	nucleus	51.31	45.31
PGSC0003DMT400046254	Potato	cytosol	51.31	45.26
Zm00001d022096_P002	Maize	mitochondrion	47.17	45.18
TraesCS5D01G081900.1	Wheat	mitochondrion	45.93	44.82
TraesCS3D01G443600.1	Wheat	mitochondrion	45.1	43.72
TraesCS4A01G463300.1	Wheat	mitochondrion	47.31	43.69
TraesCS7A01G025800.1	Wheat	mitochondrion	47.17	43.57
TraesCS7D01G023600.1	Wheat	mitochondrion	47.17	43.57
TraesCS3B01G487900.1	Wheat	mitochondrion	44.69	43.49
TraesCS3A01G450800.1	Wheat	mitochondrion	44.41	43.16
Zm00001d027244_P001	Maize	cytosol	20.55	40.71
HORVU7Hr1G002880.2	Barley	plastid	44.97	40.7
Zm00001d002717_P001	Maize	mitochondrion	22.34	39.71
Zm00001d053999_P001	Maize	cytosol	21.66	38.2
KRH10420	Soybean	mitochondrion	25.38	37.17
CDY20370	Canola	cytosol	13.38	36.06
CDY39032	Canola	cytosol	11.72	33.86
CDY04161	Canola	cytosol	26.9	32.34
CDY41581	Canola	cytosol	34.48	30.94
CDY54618	Canola	cytosol	34.48	30.94
CDY07941	Canola	cytosol	34.34	30.78
CDX73996	Canola	cytosol	34.34	30.78
CDY13308	Canola	cytosol	34.34	30.74
CDY22207	Canola	cytosol	34.34	30.74
CDY41316	Canola	cytosol, extracellular	34.34	30.74
CDY11249	Canola	cytosol	33.79	30.7
CDX80862	Canola	cytosol, plastid	33.79	30.28
CDY22373	Canola	cytosol	16.41	29.82
CDX71534	Canola	cytosol	16.41	29.82
CDY02428	Canola	cytosol, extracellular	16.28	29.57
CDY25226	Canola	cytosol	16.28	29.57
CDX73571	Canola	cytosol	30.21	29.48
CDX78154	Canola	cytosol	30.07	29.3
CDX67563	Canola	cytosol	34.07	28.1
CDY39033	Canola	cytosol	15.59	27.83
CDY36602	Canola	cytosol	16.28	27.7
CDY20470	Canola	cytosol, plasma membrane	16.28	27.7
CDY24076	Canola	cytosol	16.28	27.7
CDY30665	Canola	cytosol	16.28	27.7
CDX74842	Canola	cytosol	15.72	27.67
CDY02494	Canola	cytosol	16.14	27.46
CDY33111	Canola	endoplasmic reticulum, plasma membrane, vacuole	26.9	27.23
CDY25685	Canola	cytosol	16.0	27.23
CDY32995	Canola	cytosol, extracellular	15.03	26.98
CDX88666	Canola	cytosol	15.03	26.98
CDY02806	Canola	cytosol	15.03	26.98
CDY58566	Canola	cytosol	15.03	26.98
CDY43865	Canola	cytosol	15.03	26.98
CDY32714	Canola	cytosol	15.03	26.98
CDY35832	Canola	cytosol	15.03	26.01
CDX70903	Canola	cytosol	14.9	25.96
CDX92914	Canola	cytosol, extracellular	15.45	25.28
CDX97472	Canola	cytosol	15.45	25.17
CDY14224	Canola	cytosol	15.45	25.17
CDY08201	Canola	cytosol	12.28	25.07
CDY35245	Canola	cytosol	15.31	25.06
CDY06847	Canola	cytosol	15.31	25.06
CDY20371	Canola	cytosol, plastid	15.17	25.0
CDY30663	Canola	cytosol	14.48	24.31
CDY05176	Canola	cytosol	13.93	23.82
CDY27761	Canola	cytosol	13.93	23.82
CDX74142	Canola	cytosol	13.93	23.82
CDY40714	Canola	cytosol	13.93	23.82
CDY18782	Canola	cytosol	13.93	23.82
CDY18801	Canola	cytosol	13.93	23.82
CDX89923	Canola	cytosol	24.28	23.04
CDX72118	Canola	plastid	29.79	22.88
CDY59958	Canola	cytosol	11.17	22.25
CDY56774	Canola	plastid	29.79	21.22
CDY37450	Canola	mitochondrion	25.52	20.0
CDY32490	Canola	mitochondrion	25.52	19.96
CDX88865	Canola	cytosol, extracellular	14.9	17.17
CDY02982	Canola	cytosol	26.76	16.45
CDX69950	Canola	cytosol	24.0	15.93
CDY62119	Canola	cytosol	23.72	15.75
CDY42324	Canola	cytosol, extracellular	15.03	15.2
CDY44958	Canola	cytosol, plasma membrane	15.03	15.12
CDY18139	Canola	extracellular, vacuole	6.07	14.52
CDY69655	Canola	cytosol, nucleus	0.28	0.88

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078GF33	UniProt:A0A078GF33	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	EnsemblPlants:CDY23949	ProteinID:CDY23949	ProteinID:CDY23949.1	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00024455001	InterPro:P-loop_NTPase
PFAM:PF00004	PRINTS:PR00830	ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF55	SMART:SM00382
SUPFAM:SSF52540	UniParc:UPI0004EDCA84	SEG:seg	:	:	:

Description

BnaC03g17420DBnaC03g17420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GF33]

Coordinates

chrLK032152:+:104569..107668

Molecular Weight (calculated)

80116.2 Da

IEP (calculated)

5.809

GRAVY (calculated)

-0.490

Length

725 amino acids

Sequence
(BLAST)

001: MGRRGVDGRN NKRDLSRAMD WCGKDLSTAE EIVDDLRSRY GKYARLTRQA LVLNVRNVLN ARNNNKKRVK EDEEEDDNND SDEGTGGKMK KQRRLEDKSV
101: SSSSLEDSDG HISTSEDAKL KKPILVETNV EAETVTNNKG MLKRESPSPP PPEGPTFKDF AGIKKVLNQL DQYILSPLLN PPVFWKIGAK PPSGILFHGP
201: PGCGKTQLAN AVANEAGVPF YQISATQVLS GVSGESEENI RELFSKAYRT APSIVFIDET DAIGSKRENQ QREMEKRIVT QLLTCMDGPP PGDTAAGYVV
301: VIGATNTPDA LDPALRRGRR FGREIALTAP DEHAMAEILS LVAQRLRLEG SFNMKRIARL TPGFVGADLE ELADMAASLC VKRIMDSRKL QLSGDNEDLD
401: KLFVRMSDFE EAVKLVKGSL TREGFSTVPD VSWDDVGGLG HLRSELNNYI VRPIKYPDMY EKFGKTLETG FLLYGPPGCG KTLVAKAVAN EAGANFIHIK
501: GPELLNKYVG ESERAIRTLF QRARTSSPCV IFFDEVDALT GRRGREGDHL VVGGLLNQFL TELHGGDRRD VYVIGATNRL DEIDRAFLRP GRFANPVYVP
601: LPNADERVSI LKSIAKKRPI DPSVDLDATA TKYCEDFSGA DLANLMDKAI HVAVKEKIQS CESSEDGDMD LSDCTIKMTH FKQALSLVTP SVSKQQIKHY
701: EEQRDTLQSS TNMDEINVGP SFTLE

Best Arabidopsis Sequence Match ( AT3G01610.2 )
(BLAST)

001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE DEIEKARTKS

Arabidopsis Description

CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.