Factsheet for PGSC0003DMT400046254

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g068330.2.1	Tomato	nucleus	97.57	97.69
PGSC0003DMT400015455	Potato	mitochondrion	71.53	77.06
CDY25624	Canola	cytosol	20.19	66.14
KRH44049	Soybean	nucleus	63.14	65.61
VIT_01s0010g02600.t01	Wine grape	cytosol	65.82	65.58
Zm00001d009592_P001	Maize	cytosol	19.95	62.6
GSMUA_Achr4P03560_001	Banana	mitochondrion	59.37	62.4
Zm00001d035913_P002	Maize	cytosol, mitochondrion	52.31	58.66
Zm00001d045566_P001	Maize	cytosol, mitochondrion	54.38	58.2
Os06t0109400-01	Rice	cytosol	54.5	58.18
EER87717	Sorghum	cytosol	54.5	57.81
CDX74308	Canola	mitochondrion	48.54	56.52
TraesCS7D01G023600.1	Wheat	mitochondrion	52.31	54.78
Zm00001d022096_P002	Maize	mitochondrion	50.37	54.69
TraesCS7A01G025800.1	Wheat	mitochondrion	52.19	54.65
TraesCS5D01G081900.1	Wheat	mitochondrion	49.27	54.51
TraesCS4A01G463300.1	Wheat	mitochondrion	51.95	54.39
TraesCS3B01G487900.1	Wheat	mitochondrion	48.78	53.83
CDX91939	Canola	cytosol, mitochondrion	50.73	53.67
HORVU7Hr1G002880.2	Barley	plastid	51.95	53.31
AT3G01610.2	Thale cress	nucleus	53.77	53.25
TraesCS3A01G450800.1	Wheat	mitochondrion	48.18	53.08
Zm00001d027244_P001	Maize	cytosol	23.6	53.01
TraesCS3D01G443600.1	Wheat	mitochondrion	48.05	52.81
CDX84794	Canola	cytosol	47.32	52.36
Bra000999.1-P	Field mustard	cytosol, mitochondrion	52.92	52.22
Bra022833.1-P	Field mustard	cytosol	46.84	51.82
Zm00001d002717_P001	Maize	mitochondrion	25.55	51.47
CDY23949	Canola	cytosol	45.26	51.31
CDY45794	Canola	nucleus	48.05	49.56
Zm00001d053999_P001	Maize	cytosol	24.09	48.18
CDX89698	Canola	endoplasmic reticulum	39.17	46.33
PGSC0003DMT400018483	Potato	cytosol	17.88	35.85
PGSC0003DMT400072919	Potato	cytosol	25.18	33.88
PGSC0003DMT400031321	Potato	cytosol	31.87	32.55
PGSC0003DMT400050662	Potato	cytosol	31.75	32.42
PGSC0003DMT400055513	Potato	cytosol	31.39	31.97
PGSC0003DMT400027096	Potato	cytosol	31.14	31.68
PGSC0003DMT400046624	Potato	cytosol	31.14	31.6
PGSC0003DMT400006190	Potato	cytosol	12.41	31.29
PGSC0003DMT400079514	Potato	cytosol	14.84	30.65
PGSC0003DMT400053010	Potato	cytosol	14.11	28.09
PGSC0003DMT400023656	Potato	cytosol	14.6	28.04
PGSC0003DMT400012446	Potato	cytosol	14.6	27.97
PGSC0003DMT400078301	Potato	cytosol	13.99	27.78
PGSC0003DMT400040872	Potato	cytosol	14.72	27.25
PGSC0003DMT400051744	Potato	cytosol	14.6	27.03
PGSC0003DMT400063574	Potato	cytosol	12.77	24.82
PGSC0003DMT400038718	Potato	cytosol	12.77	24.25
PGSC0003DMT400013679	Potato	cytosol	22.51	19.89

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:102588443	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	UniProt:M1BIV2
InterPro:NVL2_nucleolin-bd	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF16725	EnsemblPlantsGene:PGSC0003DMG400017956	PGSC:PGSC0003DMG400017956
EnsemblPlants:PGSC0003DMT400046254	ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF55	SMART:SM00382	SUPFAM:SSF52540
UniParc:UPI0002952FCB	RefSeq:XP_006345366.1	SEG:seg	:	:	:

Description

Protein cdcH [Source:PGSC_GENE;Acc:PGSC0003DMG400017956]

Coordinates

chr1:+:64120011..64127137

Molecular Weight (calculated)

90879.3 Da

IEP (calculated)

8.025

GRAVY (calculated)

-0.564

Length

822 amino acids

Sequence
(BLAST)

001: MGRGGRGGGS GGRRSLSSAF DRELRTHIES CKNNYLSVED LVDHLRSSYH KYSREKLQPF TKRVQDVLQL QSSNPNSTEE VTPPKKKPKR DGSEQRLQLL
101: EKKHIMNSQR KKQEGDGSSS TTLASTSDSD DSHSSSSSDA IYGEKLEDKP DLMKSMLRHT YNQQVNGTPK SKKIEYEVIH DNNDEKRKKL VMSKGGGQRR
201: NGATKDLGGG GVEGERFGDS EGNVDGPKFK DLGGMDGVLE ELKMEVIVPL YHPQLTKHLG VRPMSGILLH GPPGCGKTKL AHAIANETRV PFYKLSATEL
301: VSGVSGASEE NIRELFSKAY RTAPSIVFID EIDAIAAKRE NLQREMERRI VTQLMTCMDE SHRLVKPDDA KGTALATDKR NNEAKSDGSN GGPGYVLVIG
401: ATNRPDAIDP ALRRPGRFDR EIVLGIPDEN ARVQILSVLT RNLRVEGAFD LTKIASSTPG FVGADLAALT NKAGNLAMKR IIDERKVELS RELSDGEDAE
501: EWWRKPWSPE EMEKLSIFMA DFEEAAKLIQ PSSRREGFSA IPNVKWEDVG GLDSLRHDFD RYIVRRIKNP KDYMGFGVDL ETGFLLYGPP GCGKTLIAKA
601: VANEAGANFI HIKGPEILNK YVGESELTIR TLFTRARTCA PCILFFDEMD ALTTKRGKEG GWVVERLLNQ LLIELDGADQ RKGVYVIGAT NRPEVMDQAI
701: LRPGRLGRLL YVPLPSPDER VLILKALARK KPIDSSVDLM TIGRDDACKN FSGADLAALM NEAAMVALED KLTAMATGCG DGDTSSIIKE SHFKRALEKV
801: SPSVSNEQIQ YYQELSKHFR AS

Best Arabidopsis Sequence Match ( AT3G01610.2 )
(BLAST)

001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE DEIEKARTKS

Arabidopsis Description

CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.