Factsheet for Solyc01g068330.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046254	Potato	cytosol	97.69	97.57
KRH44049	Soybean	nucleus	63.46	65.87
CDY25624	Canola	cytosol	20.1	65.74
VIT_01s0010g02600.t01	Wine grape	cytosol	65.9	65.58
Zm00001d009592_P001	Maize	cytosol	20.1	62.98
GSMUA_Achr4P03560_001	Banana	mitochondrion	59.07	62.02
Zm00001d035913_P002	Maize	cytosol, mitochondrion	52.13	58.39
Zm00001d045566_P001	Maize	cytosol, mitochondrion	54.32	58.07
EER87717	Sorghum	cytosol	54.57	57.81
Os06t0109400-01	Rice	cytosol	54.08	57.66
CDX74308	Canola	mitochondrion	48.72	56.66
Zm00001d022096_P002	Maize	mitochondrion	50.79	55.09
TraesCS7D01G023600.1	Wheat	mitochondrion	52.5	54.9
TraesCS5D01G081900.1	Wheat	mitochondrion	49.57	54.78
TraesCS7A01G025800.1	Wheat	mitochondrion	52.38	54.78
TraesCS4A01G463300.1	Wheat	mitochondrion	52.13	54.52
TraesCS3B01G487900.1	Wheat	mitochondrion	49.09	54.09
CDX91939	Canola	cytosol, mitochondrion	50.91	53.8
TraesCS3A01G450800.1	Wheat	mitochondrion	48.48	53.35
HORVU7Hr1G002880.2	Barley	plastid	52.01	53.31
Zm00001d027244_P001	Maize	cytosol	23.75	53.28
AT3G01610.2	Thale cress	nucleus	53.84	53.25
TraesCS3D01G443600.1	Wheat	mitochondrion	48.23	52.94
CDX84794	Canola	cytosol	47.38	52.36
Bra000999.1-P	Field mustard	cytosol, mitochondrion	53.11	52.34
Bra022833.1-P	Field mustard	cytosol	46.89	51.82
Zm00001d002717_P001	Maize	mitochondrion	25.58	51.47
CDY23949	Canola	cytosol	45.31	51.31
CDY45794	Canola	nucleus	48.23	49.69
Zm00001d053999_P001	Maize	cytosol	24.12	48.18
CDX89698	Canola	endoplasmic reticulum	39.59	46.76
Solyc05g012190.2.1	Tomato	cytosol	25.58	34.37
Solyc06g074980.2.1	Tomato	nucleus	31.67	32.3
Solyc11g069720.1.1	Tomato	cytosol, extracellular, nucleus, plastid	31.43	32.05
Solyc10g084050.1.1	Tomato	cytosol, nucleus, plastid, unclear	31.06	31.56
Solyc09g008070.2.1	Tomato	cytosol, unclear	30.69	31.19
Solyc03g112590.2.1	Tomato	cytosol, nucleus, plastid	31.18	30.81
Solyc01g109940.2.1	Tomato	nucleus	14.86	30.65
Solyc08g021990.1.1	Tomato	cytosol, nucleus, plastid	6.94	30.0
Solyc10g054040.1.1	Tomato	cytosol, unclear	14.37	29.57
Solyc06g082660.2.1	Tomato	cytosol, nucleus	14.49	28.74
Solyc06g082630.2.1	Tomato	cytosol, plastid	14.49	28.74
Solyc03g123730.2.1	Tomato	nucleus	14.74	28.27
Solyc06g063140.2.1	Tomato	cytosol, extracellular, nucleus, plastid	14.74	28.21
Solyc05g018590.2.1	Tomato	nucleus	13.89	27.34
Solyc05g018570.2.1	Tomato	cytosol, extracellular, nucleus, plastid	13.89	27.34
Solyc06g083620.2.1	Tomato	nucleus, plastid	14.62	27.03
Solyc01g099760.2.1	Tomato	nucleus, plastid	12.91	25.06
Solyc10g078320.1.1	Tomato	nucleus	30.09	25.03
Solyc06g008730.2.1	Tomato	cytosol	22.66	20.02
Solyc04g057960.2.1	Tomato	endoplasmic reticulum, plasma membrane	24.6	17.91

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	UniProt:K4AX79	InterPro:NVL2_nucleolin-bd
InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF16725	ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF55
SMART:SM00382	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc01g068330.2	EnsemblPlants:Solyc01g068330.2.1	UniParc:UPI0002763566	SEG:seg

Description

No Description!

Coordinates

chr1:-:77544047..77550053

Molecular Weight (calculated)

90994.5 Da

IEP (calculated)

8.290

GRAVY (calculated)

-0.569

Length

821 amino acids

Sequence
(BLAST)

001: MGRGGRGGGS GGRRSLSSSF DRELRTHIES CKNNYLSVED LVDHLRSSYH KYSREKLQPF TKRVQDVLQL QRSNPNSTEE VTPPKKKPKR DGSEQRLQLL
101: EKKHIMSSQR KKQEGDGSSS TTLASTSDSD DSYSSSSSDA IYGEKLEEKP DLMKSMLRHT YNQQVNSTPK SKKIEYEVIH DNNDEKRKKL VMSKGGQRRN
201: IATKDLGGGR GGGEGERFGD SEGNVDGPKF KDLGGMDGVL EELKMEVIVP LYHPQLTKHL GVRPMSGILL HGPPGCGKTK LAHAIANETR VPFYKLSATE
301: LVSGVSGASE ENIRELFSKA YRTAPSIVFI DEIDAIAAKR ENLQREMERR IVTQLMTCMD ESHRLVKPDD AKGTALPTDK RNNEAKSDGS NGGPGYVLVI
401: GATNRPDAID PALRRPGRFD REIALGIPDE NARVQILSVL TRNLRVEGAF DLTKIASSTP GFVGADLAAL TNKAGNLAMK RIIDERKVEL SRELSDGEDA
501: EEWWRKPWSP EEMEKLSIFM ADFEEAAKLI QPSSRREGFS AIPNVKWEDV GGLDSLRHDF DRYIVRRIKN PKDYMGFGVD LETGFLLYGP PGCGKTLIAK
601: AVANEAGANF IHIKGPEILN KYVGESELTI RTLFTRARTC APCILFFDEM DALTTKRGKE GGWVVERLLN QLLIELDGAD QRKGVYVIGA TNRPEVMDQA
701: ILRPGRLGRL LYVPLPSPDE RVLILKALAR KKPVDSSVDL MTIGRDDACK NFSGADLAAL MNEAAMVALE DKLTAMATSC DDTSSVIKES HFKCALEKVS
801: PSVSNEQIKY YQELSKHFRA A

Best Arabidopsis Sequence Match ( AT3G01610.2 )
(BLAST)

001: MGRRGRGGGG GMGGGINRRY LSQVMDTCGK DLSTAEDIVD DLRSRYGNFA RLTRQVLLLN VRQVLNVRNN KRVKDEDEDD NIGDEEGSAS QRKKQRRVDE
101: KEEKLQRAEQ SHLRKRNMER SVSSSPSSSS SSEDSGDVST SEDAVYGEKL SPPRFDLIND SLRDNYAKLN SSSKKPIGSP AEKNVEVETV SNKGRSKLAT
201: MGARKEAKVS LSLSGATGNG DLEVEGTKGP TFKDFGGIKK ILDELEMNVL FPILNPEPFK KIGVKPPSGI LFHGPPGCGK TKLANAIANE AGVPFYKISA
301: TEVISGVSGA SEENIRELFS KAYRTAPSIV FIDEIDAIGS KRENQQREME KRIVTQLLTC MDGPGNKGDK NAPDSSAGFV LVIGATNRPD ALDPALRRSG
401: RFETEIALTA PDEDARAEIL SVVAQKLRLE GPFDKKRIAR LTPGFVGADL ESVAYLAGRK AIKRILDSRK SEQSGDGEDD KSWLRMPWPE EELEKLFVKM
501: SDFEEAVNLV QASLTREGFS IVPDVKWDDV GGLDHLRLQF NRYIVRPIKK PDIYKAFGVD LETGFLLYGP PGCGKTLIAK AAANEAGANF MHIKGAELLN
601: KYVGESELAI RTLFQRARTC APCVIFFDEV DALTTSRGKE GAWVVERLLN QFLVELDGGE RRNVYVIGAT NRPDVVDPAF LRPGRFGNLL YVPLPNADER
701: ASILKAIARK KPIDPSVDLD GIAKNNCEGF SGADLAHLVQ KATFQAVEEM IGSSESSEDD VTDITQCTIK TRHFEQALSL VSPSVNKQQR RHYDALSTKL
801: QESVGRNTEQ VTIGPSFTLE DEIEKARTKS

Arabidopsis Description

CDC48CCell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.