Factsheet for Solyc03g112590.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 5
plastid 1
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046624	Potato	cytosol	95.19	97.65
VIT_17s0000g08890.t01	Wine grape	cytosol	88.09	89.93
KRH63585	Soybean	endoplasmic reticulum	86.52	88.33
KRH54357	Soybean	cytosol, endoplasmic reticulum, mitochondrion	86.16	87.96
GSMUA_Achr7P04540_001	Banana	cytosol	83.27	87.59
Solyc11g069720.1.1	Tomato	cytosol, extracellular, nucleus, plastid	84.84	87.58
Solyc06g074980.2.1	Tomato	nucleus	84.6	87.33
Solyc10g084050.1.1	Tomato	cytosol, nucleus, plastid, unclear	84.84	87.25
Solyc09g008070.2.1	Tomato	cytosol, unclear	83.27	85.64
Solyc05g012190.2.1	Tomato	cytosol	28.4	38.63
Solyc01g109940.2.1	Tomato	nucleus	16.49	34.42
Solyc08g021990.1.1	Tomato	cytosol, nucleus, plastid	7.58	33.16
Solyc03g123730.2.1	Tomato	nucleus	16.73	32.48
Solyc06g063140.2.1	Tomato	cytosol, extracellular, nucleus, plastid	16.73	32.4
Solyc10g054040.1.1	Tomato	cytosol, unclear	15.52	32.33
Solyc01g068330.2.1	Tomato	nucleus	30.81	31.18
Solyc01g099760.2.1	Tomato	nucleus, plastid	15.16	29.79
Solyc06g082660.2.1	Tomato	cytosol, nucleus	14.8	29.71
Solyc06g082630.2.1	Tomato	cytosol, plastid	14.8	29.71
Solyc05g018590.2.1	Tomato	nucleus	14.68	29.26
Solyc05g018570.2.1	Tomato	cytosol, extracellular, nucleus, plastid	14.68	29.26
Solyc06g083620.2.1	Tomato	nucleus, plastid	15.52	29.05
Solyc10g078320.1.1	Tomato	nucleus	32.37	27.25
Solyc06g008730.2.1	Tomato	cytosol	27.2	24.33
Solyc04g057960.2.1	Tomato	endoplasmic reticulum, plasma membrane	25.27	18.62

Protein Annotations

Gene3D:1.10.8.60	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:AAA_ATPase_CDC48	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:Asp_de-COase-like_dom_sf	InterPro:CDC48_domain_2-like_sf	InterPro:CDC4_N-term_subdom
InterPro:Cdc48_dom2	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	UniProt:K4BKB2	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359	PFAM:PF02933
ScanProsite:PS00674	PANTHER:PTHR23077	PANTHER:PTHR23077:SF92	SMART:SM00382	SMART:SM01072	SMART:SM01073
SUPFAM:SSF50692	SUPFAM:SSF52540	SUPFAM:SSF54585	EnsemblPlantsGene:Solyc03g112590.2	EnsemblPlants:Solyc03g112590.2.1	TIGRFAMs:TIGR01243
UniParc:UPI0002767689	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:-:62976668..62987172

Molecular Weight (calculated)

92837.3 Da

IEP (calculated)

5.139

GRAVY (calculated)

-0.347

Length

831 amino acids

Sequence
(BLAST)

001: MLIMRTSIRS IEEQQLFIQF IGQLSIAKIK VRKNNKKDFA TAILERKRSP NRLIVDEAIN DDNSVVSMHP AKMEELQLFR GDTVLLKGKK RKDTVCVVLA
101: DEQCEEHKVR LNKVVRANLR IRLGDVVSVH QCPDVKYAKR VHILPIDDTI EGMTGNLFDA YLKPYFLESY RPVRKGDLFV VRGGMRSVEF KVVETEPGEY
201: CVVAPDTEIF CEGEPIKREE EERLNEVGYD DVGGMRKQMA QIRELVELPL RHPQLFKSIG VKPPKGILLY GPPGSGKTLI GRAVANETGA FFFLINGPEI
301: MSKLAGESEG NLRKAFEEAE KNAPSIIFID ELDSIAPKRE KTHGEVERRI VSQLLTLMDG LKSRSHVIVM GATNRPNSID PALRRFGRFD REIDIGVPDE
401: IGRLEILRIH TKNMKLDDNV DLERVARDTH GYVGADLAAL CTEAALQCIR EKMDVIDLED ETIDAEVLNS MAVTNEHFQT ALGASNPSAL RETVVEVPNT
501: SWEDIGGLEN VKRELQETVQ YPVEHPEKFE KFGMSPSKGV LFYGPPGCGK TLLAKAIANE CQANFISVKG PELLTMWFGE SEANVREIFD KARQSAPCVL
601: FFDELDSIAT QRGNSVGDAG GAADRVLNQL LTEMDGMTAK KTVFIIGATN RPDIIDPALL RPGRLDQLIY IPLPDEASRL QIFKACLRKS PVAKDVDLSA
701: LARYTHGFSG ADITEICQRA CKYAIRENIE MDIERERKRS LNPEAMDEDD TDEVAEIKAA HFEESMKYAR RSVSDADIRK YQLFAQTLQQ SRGLGTEFKF
801: AEHAANATPT GATADPFASV NAAGDEDDLY S

Best Arabidopsis Sequence Match ( AT5G03340.1 )
(BLAST)

001: MSNEPESSDS KTKKDFSTAI LERKKSPNRL VVDEAINDDN SVVSLHPTTM EKLQLFRGDT ILIKGKKRKD TVCIALADET CEEPKIRMNK VVRSNLRVRL
101: GDVISVHQCP DVKYGKRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDEVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV SNEHFHTALG NSNPSALRET VVEVPNVSWE DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG NSAGDAGGAA
601: DRVLNQLLTE MDGMNAKKTV FIIGATNRPD IIDSALLRPG RLDQLIYIPL PDEDSRLNIF KACLRKSPVA KDVDVTALAK YTQGFSGADI TEICQRACKY
701: AIRENIEKDI ENERRRSQNP EAMEEDMVDD EVSEIRAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFDS TAGVGRTTGV AAADPFATSA
801: AAADDDDLYS

Arabidopsis Description

CDC48ECell division control protein 48 homolog E [Source:UniProtKB/Swiss-Prot;Acc:Q9LZF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.