Factsheet for VIT_17s0000g08890.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 5
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63585	Soybean	endoplasmic reticulum	93.12	93.12
KRH54357	Soybean	cytosol, endoplasmic reticulum, mitochondrion	92.38	92.38
PGSC0003DMT400046624	Potato	cytosol	90.17	90.62
GSMUA_Achr7P04540_001	Banana	cytosol	87.84	90.51
VIT_08s0040g01480.t01	Wine grape	cytosol	89.43	90.32
Solyc03g112590.2.1	Tomato	cytosol, nucleus, plastid	89.93	88.09
VIT_06s0061g00340.t01	Wine grape	cytosol	79.12	84.18
VIT_18s0001g13090.t01	Wine grape	cytosol	16.83	34.42
VIT_03s0038g04350.t01	Wine grape	cytosol	16.83	34.34
VIT_09s0002g00170.t01	Wine grape	cytosol	17.69	33.8
VIT_11s0016g00230.t01	Wine grape	cytosol	17.2	32.94
VIT_01s0010g02600.t01	Wine grape	cytosol	31.33	30.91
VIT_06s0004g08220.t01	Wine grape	cytosol	15.36	29.9
VIT_04s0008g04690.t01	Wine grape	cytosol	15.36	29.76
VIT_09s0002g05800.t01	Wine grape	cytosol	15.11	29.5
VIT_05s0020g01180.t01	Wine grape	cytosol	15.23	29.31
VIT_14s0060g02260.t01	Wine grape	cytosol	14.5	29.14
VIT_07s0005g05160.t01	Wine grape	cytosol	15.72	28.76
VIT_08s0040g00910.t01	Wine grape	cytosol	33.78	25.97
VIT_07s0104g01610.t01	Wine grape	cytosol	26.66	23.13
VIT_00s0125g00170.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	26.29	18.87

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100258668	wikigene:100258668	MapMan:19.2.4.2.1	Gene3D:2.40.40.20	Gene3D:3.10.330.10
Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:AAA_ATPase_CDC48	EMBL:AM475403	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core
InterPro:Asp_de-COase-like_dom_sf	ProteinID:CAN61919	ProteinID:CAN61919.1	ProteinID:CBI14985	ProteinID:CBI14985.3	InterPro:CDC48_domain_2-like_sf
InterPro:CDC4_N-term_subdom	InterPro:Cdc48_dom2	UniProt:D7SHM5	EMBL:FN594950	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	EntrezGene:LOC100258668	wikigene:LOC100258668
InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02359	PFAM:PF02933	ScanProsite:PS00674	PANTHER:PTHR23077
PANTHER:PTHR23077:SF92	SMART:SM00382	SMART:SM01072	SMART:SM01073	SUPFAM:SSF50692	SUPFAM:SSF52540
SUPFAM:SSF54585	TIGR:TC64255	TIGRFAMs:TIGR01243	UniParc:UPI0001985240	ArrayExpress:VIT_17s0000g08890	EnsemblPlantsGene:VIT_17s0000g08890
EnsemblPlants:VIT_17s0000g08890.t01	unigene:Vvi.11771	RefSeq:XP_002281671	RefSeq:XP_002281671.1	SEG:seg	:

Description

No Description!

Coordinates

chr17:+:10362993..10368115

Molecular Weight (calculated)

90340.6 Da

IEP (calculated)

4.876

GRAVY (calculated)

-0.364

Length

814 amino acids

Sequence
(BLAST)

001: MADPSSSGPS SSPEVKSVKK DFSTAILERK KSPNRLVVDE AVNDDNSVVS MNPATMEKLQ FFRGDTVLIK GKKRKDTVCI VLVDEQCEEP KIRMNKVVRA
101: NLRVRLGDVV SVHQCPDVKY GKRVHILPID DTIEGVTGNL FDAYLKPYFL ESYRPVRKGD LFLVRGGMRS VEFKVIETDP GEYCVVAPDT EIFCEGEPIK
201: REDEERLNEV GYDDVGGVRK QMAQIRELVE LPLRHPQLFK SIGVKPPKGI LLYGPPGSGK TLIARAVANE TGAFFFLING PEIMSKLAGE SESNLRKAFE
301: EAEKNAPSII FIDELDSIAP KREKTHGEVE RRIVSQLLTL MDGLKTRAHV IVIGATNRPN SIDPALRRFG RFDREIDIGV PDEVGRLEVL RIHTKNMKLS
401: DDVDLERVAK DTHGYVGADL AALCTEAALQ CIREKMDVID LEDETIDAEV LNSMAVTNEH FQTALGSSNP SALRETVVEV PNVSWEDIGG LDNVKRELQE
501: TVQYPVEHPE KFEKFGMSPS KGVLFYGPPG CGKTLLAKAI ANECQANFIS VKGPELLTMW FGESEANVRE IFDKARQSAP CVLFFDELDS IATQRGSSVG
601: DAGGAADRVL NQLLTEMDGM TAKKTVFIIG ATNRPDIIDP ALLRPGRLDQ LIYIPLPDEA SRLQIFKACL RKSPVSRDVD LVALARYTHG FSGADITEIC
701: QRSCKYAIRE NIEKDIERER KKTENPEAME EDDVDDVPEI KAAHFEESMK FARRSVSDAD IRKYQLFAQT LQQSRGFGSE FRFPDQPNNA TAASTAADPF
801: SSAAAAGDDD DLYS

Best Arabidopsis Sequence Match ( AT5G03340.1 )
(BLAST)

001: MSNEPESSDS KTKKDFSTAI LERKKSPNRL VVDEAINDDN SVVSLHPTTM EKLQLFRGDT ILIKGKKRKD TVCIALADET CEEPKIRMNK VVRSNLRVRL
101: GDVISVHQCP DVKYGKRVHI LPVDDTVEGV TGNLFDAYLK PYFLEAYRPV RKGDLFLVRG GMRSVEFKVI ETDPAEYCVV APDTEIFCEG EPVKREDEER
201: LDEVGYDDVG GVRKQMAQIR ELVELPLRHP QLFKSIGVKP PKGILLYGPP GSGKTLIARA VANETGAFFF CINGPEIMSK LAGESESNLR KAFEEAEKNA
301: PSIIFIDEID SIAPKREKTN GEVERRIVSQ LLTLMDGLKS RAHVIVMGAT NRPNSIDPAL RRFGRFDREI DIGVPDEIGR LEVLRIHTKN MKLAEDVDLE
401: RISKDTHGYV GADLAALCTE AALQCIREKM DVIDLEDDSI DAEILNSMAV SNEHFHTALG NSNPSALRET VVEVPNVSWE DIGGLENVKR ELQETVQYPV
501: EHPEKFEKFG MSPSKGVLFY GPPGCGKTLL AKAIANECQA NFISVKGPEL LTMWFGESEA NVREIFDKAR QSAPCVLFFD ELDSIATQRG NSAGDAGGAA
601: DRVLNQLLTE MDGMNAKKTV FIIGATNRPD IIDSALLRPG RLDQLIYIPL PDEDSRLNIF KACLRKSPVA KDVDVTALAK YTQGFSGADI TEICQRACKY
701: AIRENIEKDI ENERRRSQNP EAMEEDMVDD EVSEIRAAHF EESMKYARRS VSDADIRKYQ AFAQTLQQSR GFGSEFRFDS TAGVGRTTGV AAADPFATSA
801: AAADDDDLYS

Arabidopsis Description

CDC48ECell division control protein 48 homolog E [Source:UniProtKB/Swiss-Prot;Acc:Q9LZF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.